Re: [Jmol-users] Protein Hydrogen Bonds again

2008-11-09 Thread Robert Hanson
right -- as I said in an earlier message, I used 2.5. Try this: connect 2.5 {_H and connected(_O or _N)} {(_O or _N) and not within(group, _1)} HBONDS CREATE On Sun, Nov 9, 2008 at 2:54 PM, Angel Herráez [EMAIL PROTECTED] wrote: David, have you measured the length of the Hbonds you want to

Re: [Jmol-users] Protein Hydrogen Bonds again

2008-11-09 Thread David Leader
Angel wrote: David, have you measured the length of the Hbonds you want to show up? You might nedd some longer spec. I've just tested connect 1.8 {_H and connected(_O or _N)} {_O or _N} HBONDS CREATE; with http://doolittle.ibls.gla.ac.uk/top500H/1osaH.pdb and Jmol 11.6.3 and it creates and

Re: [Jmol-users] Protein Hydrogen Bonds again

2008-11-09 Thread Angel Herráez
David, have you measured the length of the Hbonds you want to show up? You might nedd some longer spec. I've just tested connect 1.8 {_H and connected(_O or _N)} {_O or _N} HBONDS CREATE; with http://doolittle.ibls.gla.ac.uk/top500H/1osaH.pdb and Jmol 11.6.3 and it creates and draws 12 new Hbonds