Re: [Jmol-users] try again (select)

I will look these over carefully. I think there are some inconsistencies that need reconciling. Bob -- ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net

Re: [Jmol-users] Reset JSMol applets & Minimized JSMol version

One more thought on this -- This is what SYNC is for. Pick an applet; any applet -- say, jmolApplet0. To reset all applets, send a script to just this applet: Jmol.script(jmolApplet0, "sync * on; sync * 'select *;reset'; sync * off") This says: turn sync ON for all applets send the script

[Jmol-users] connecting atoms in two different models of a pdb file

I want to add a strut between two atoms in different models of a biological assembly. 1hho.pdb1 lect atomno=2193 or atomno=299; connect strut; strut 0.5; color strut green - attaches atoms within a model select LYS]40:A.NZ/1 or HIS]146:B.OXT/2; - gives me an error message..and freezes up Jmol.

Re: [Jmol-users] connecting atoms in two different models of a pdb file

On 25 Sep 2015 at 20:15, Franzen, Dr. Margaret wrote: > I am using Jmol Jmol 14.3.16_2015.08.11 (2015-08-11 16:13) Wow! It seems that "select" is not recognized, neither in my version 14.3.16_2015.09.15 $ select atomno=3 ERROR en guión: no se reconoce la instrucción

Re: [Jmol-users] connecting atoms in two different models of a pdb file

Since the goal is to show the interaction between atoms that are contained in two different models, the command to select two atoms in the same model doesn't work. I loaded the biological assembly; selected all models, and then tried to show interactions between models. Although we have a

Re: [Jmol-users] connecting atoms in two different models of a pdb file

Margaret, Could you try something like "select atomno=XXX and model=1" to get the specific atom in just one of the biological units? I think I remember being able to select just one of the models in an assembly using that "model=" command. I'm not by my CPU right now or I'd try it myself -

[Jmol-users] draw ramachandran broken

Draw ramachandran is broken after Jmol 14.2.13_2015.03.23 $ print _version 1402013 $ draw RAMACHANDRAN $ ... $ print _version 1402014 $ draw RAMACHANDRAN script ERROR: invalid argument draw >> ramachandran << $

Re: [Jmol-users] try again (select)

On 09/25/2015 07:56 AM, Robert Hanson wrote: > Your keys are only "1" and "2" -- there are no "res" anythings at that > level. > Yes, because I thought the '**' was specially for searching at the second level. Wouldn't it be more consistent if it would be 'xxx*' (etc.) and not 'xxx**' when only