Re: [Jmol-users] JSME and SMILES

2016-07-18 Thread Otis Rothenberger
Jennifer, I knew this statement was out there. It took me a while to find the Web doc: "public String JME.smiles() returns a SMILES string of the current molecule(s) or reaction. For single molecule without stereochemistry the SMILES is unique, unification is not yet implemented for molecules

Re: [Jmol-users] JSME and SMILES

2016-07-18 Thread Otis Rothenberger
Jennifer, You have to set SMILES settings in the JSME options part of your JSME set-up to invoke stereochemistry and E/Z. This page explains all of the options and the set up procedure: http://peter-ertl.com/jsme/JSME_2015-06-14/doc.html BUT, BUT, it looks like you are doing SMILES

[Jmol-users] JSME and SMILES

2016-07-18 Thread Jennifer L. Muzyka
I’m not sure if this listserv is the proper place for me to ask this question, but I’m not sure where else to ask. I’m using the JSME embedded within Jmol/JSmol to let students practice reaction questions where they can draw products. The ability to draw starting materials is currently in