Re: [Jmol-users] Echo with sub and sup tags
Hi Dean Yes. I have used sub in echos, although not often. I have a recent example using 11.5.41. My echo is Hsub2/subO Maybe your problem is only with long subscripted texts? - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Echo with sub and sup tags
OK, here is the state for ammonia, with a label of Point Group =
Csub3v/sub at the bottom left. Without the tags the spacing is normal.
Dean
# Jmol state version 11.6.RC11_dev 2008-08-14 16:55;
# fullName = jmolApplet0__163573001520736__;
# documentBase =
http://dhj-macbook.local/~djohnston/symmetry/gallery.html;;
# codeBase = http://dhj-macbook.local/~djohnston/symmetry/gallery/Jmol/;;
function _setWindowState();
# height 429;
# width 429;
stateVersion = 1106000;
backgroundColor = [xff];
axis1Color = [xff];
axis2Color = [x008000];
axis3Color = [xff];
ambientPercent = 45;
diffusePercent = 84;
specular = true;
specularPercent = 22;
specularPower = 40;
specularExponent = 6;
statusReporting = true;
end function;
function _setFileState();
set allowEmbeddedScripts false;
set autoBond false;
set appendNew true;
set appletProxy ;
set applySymmetryToBonds false;
set bondRadiusMilliAngstroms 150;
set bondTolerance 0.45;
set defaultDirectory ;
set defaultLattice {0.0 0.0 0.0};
set defaultLoadScript ;
set defaultVDW Jmol;
set forceAutoBond false;
set loadFormat http://www.rcsb.org/pdb/files/%FILE.pdb;;
set minBondDistance 0.4;
set pdbSequential false;
set pdbGetHeader false;
set percentVdwAtom 20;
set smartAromatic true;
data model inline
4
ammonia
N0.0.0.2525
H -0.4761 -0.8247 -0.0842
H -0.47610.8247 -0.0842
H0.95220. -0.0842
end model inline;;
end function;
function _setVariableState();
set defaultanglelabel %VALUE %UNITS;
set defaultcolorscheme Jmol;
set defaultdirectory ;
set defaultdistancelabel %VALUE %UNITS;
set defaultdrawarrowscale 0.5;
set defaultlattice {0 0 0};
set defaultloadscript ;
set defaulttorsionlabel %VALUE %UNITS;
set defaulttranslucent 0.5;
set defaultvdw Jmol;
set allowembeddedscripts true;
set allowrotateselected false;
set appletproxy ;
set applysymmetrytobonds false;
set autobond false;
set autofps false;
set axes window;
set axesmode 0;
set axesscale 2.0;
set bondmodeor false;
set bondradiusmilliangstroms 150;
set bondtolerance 0.45;
set cartoonrockets false;
set chaincasesensitive false;
set dataseparator ~~~;
set delaymaximumms 0;
set dipolescale 1.0;
set disablepopupmenu false;
set displaycellparameters true;
set dotdensity 3;
set dotsselectedonly false;
set dotsurface true;
set drawhover false;
set drawpicking false;
set dynamicmeasurements false;
set ellipsoidarcs false;
set ellipsoidaxes false;
set ellipsoidaxisdiameter 0.02;
set ellipsoidball true;
set ellipsoiddotcount 200;
set ellipsoiddots false;
set ellipsoidfill false;
set forceautobond false;
set greyscalerendering false;
set hbondsbackbone false;
set hbondssolid false;
set helppath http://www.stolaf.edu/academics/chemapps/jmol/docs/index.htm
;
set hermitelevel 0;
set hidenameinpopup false;
set hidenavigationpoint false;
set highresolution false;
set historylevel 0;
set hoverdelay 0.5;
set isosurfacepropertysmoothing true;
set justifymeasurements false;
set loadformat http://www.rcsb.org/pdb/files/%FILE.pdb;;
set measureallmodels false;
set measurementlabels true;
set messagestylechime false;
set minbonddistance 0.4;
set navigationperiodic false;
set navigationspeed 5.0;
set pdbgetheader false;
set pdbsequential false;
set percentvdwatom 20;
set pickingspinrate 10;
set picklabel ;
set pointgroupdistancetolerance 0.2;
set pointgrouplineartolerance 8.0;
set propertyatomnumberfield 0;
set propertycolorscheme roygb;
set propertydatafield 0;
set quaternionframe c;
set rangeselected false;
set ribbonaspectratio 16;
set ribbonborder false;
set rocketbarrels false;
set selectallmodels true;
set selecthetero true;
set selecthydrogen true;
set sheetsmoothing 1.0;
set showhiddenselectionhalos false;
set showhydrogens true;
set showmeasurements true;
set showmultiplebonds true;
set shownavigationpointalways false;
set smartaromatic true;
set solventprobe false;
set solventproberadius 1.2;
set ssbondsbackbone false;
set stereodegrees 5;
set strandcountformeshribbon 7;
set strandcountforstrands 5;
set testflag1 false;
set testflag2 false;
set testflag3 false;
set testflag4 false;
set tracealpha true;
set usenumberlocalization true;
set vectorscale 1.0;
set vibrationperiod 1.0;
set vibrationscale 1.0;
set wireframerotation false;
set zoomlarge true;
set zshade false;
#user-defined variables;
# --none--;
# label defaults;
select none;
color label none;
background label none;
set labelOffset 4 4;
set labelAlignment left;
set labelPointer off;
font label 13.0 SansSerif Plain;
end function;
function _setModelState();
connect ({0}) ({1}) single;
connect ({0}) ({2}) single;
connect ({0}) ({3}) single;
measures delete;
select *; set measures nanometers;
font
Re: [Jmol-users] Echo with sub and sup tags
On 27 Aug 2008 at 10:57, Dean Johnston wrote: OK, here is the state for ammonia, with a label of Point Group = Csub3v/sub at the bottom left. Without the tags the spacing is normal. Just typing it in the console of 11.6.RC10 app it looks Ok to me Maybe some combination with other scripts are doing it? - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Echo with sub and sup tags
Found it! It's an artifact of the set antialiasDisplay (true). (It only appears unusual when a sub or sup tag it present *and* antialiasDisplay is on.) I'll leave it to Bob to track *that* one down... Dean On Wed, Aug 27, 2008 at 11:56 AM, Angel Herráez [EMAIL PROTECTED]wrote: On 27 Aug 2008 at 10:57, Dean Johnston wrote: OK, here is the state for ammonia, with a label of Point Group = Csub3v/sub at the bottom left. Without the tags the spacing is normal. Just typing it in the console of 11.6.RC10 app it looks Ok to me Maybe some combination with other scripts are doing it? - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Echo with sub and sup tags
that's what I needed. Fixed. Vertical was off as well. On Wed, Aug 27, 2008 at 10:56 AM, Angel Herráez [EMAIL PROTECTED]wrote: On 27 Aug 2008 at 10:57, Dean Johnston wrote: OK, here is the state for ammonia, with a label of Point Group = Csub3v/sub at the bottom left. Without the tags the spacing is normal. Just typing it in the console of 11.6.RC10 app it looks Ok to me Maybe some combination with other scripts are doing it? - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Echo with sub and sup tags
Dear All - I've just noticed an odd behavior with the echo command. I've been using sub (subscript) tags in some of my echos (I think this is an undocumented feature). At some recent point (after 11.4), any echo'ed text with a sub tag shows up with extra spaces between the letters. All other echos are unaffected. Has anybody else noticed this? (Is anybody else using this feature?) Dean - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Echo with sub and sup tags
I've just noticed an odd behavior with the echo command. I've been using sub (subscript) tags in some of my echos (I think this is an undocumented feature). At some recent point (after 11.4), any echo'ed text with a sub tag shows up with extra spaces between the letters. All other echos are unaffected. Has anybody else noticed this? (Is anybody else using this feature?) Dean - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
