Angel suggested yesterday the minimizing solution which works.
Thank you both!
Jaim
Here’s Angel complete solution:
mutate 148 SER;
select [SER]148:A;
color CPK;
wireframe 0.2;
color opaque;
minimize (selected and sidechain);
// alternative: minimize fix (not (selected and sidechain));
(sorry for the delay -- the images were over the byte limit for the list)
I just meant that I think the flexible fit algorithm in Jmol just uses the
carbon atoms, not the rest of the atoms, so it is quite possible that a C-O
bond will be rotated. Did you try minimizing?
On 29 Jan 2017, at 2:39 PM, Robert Hanson
> wrote:
Might be just the carbon atoms.
Can you please be more explicit?
What I’m doing wrong?
Is there a way to apply the mutate command and get the correct rendering?
Might be just the carbon atoms.
On Sun, Jan 29, 2017 at 3:31 AM, Jaime Prilusky <
jaime.prilu...@weizmann.ac.il> wrote:
>
> Something funny on the results I get from the mutate command.
>
> By mutating a residue into the same residue, I was expecting no
> conformational change.
>
> What I’m
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