Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Clemens Lang
Hi, On Tue, Dec 25, 2012 at 11:26:17PM -0600, Peng Yu wrote: Could not open /opt/local/lib:/opt/local/lib/libtk8.6.dylib: Error opening or reading file (referenced from /opt/local/bin/wish8.6) DEBUG: Marking /opt/local/bin/wish8.6 as broken what's the output of otool -L

Re: Failed to install webkit-gtk

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 05:45, Eneko Gotzon Ares wrote: On Dec 26, 2012, at 12:18 AM, Ryan Schmidt wrote: I'll try to reproduce the problem on my Power Mac. Thank you very much for your time, Ryan, and for your knowledge... :) I do get the same error on my Power Mac with Leopard. Would you

Re: Failed to install webkit-gtk

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 05:57, Ryan Schmidt wrote: I do get the same error on my Power Mac with Leopard. Would you please file a bug report in our issue tracker? https://guide.macports.org/chunked/project.html And I've also reproduced it now on Leopard on Intel.

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Peng Yu
On Wed, Dec 26, 2012 at 2:52 AM, Clemens Lang c...@macports.org wrote: Hi, On Tue, Dec 25, 2012 at 11:26:17PM -0600, Peng Yu wrote: Could not open /opt/local/lib:/opt/local/lib/libtk8.6.dylib: Error opening or reading file (referenced from /opt/local/bin/wish8.6) DEBUG: Marking

can't write to /var/folders

2012-12-26 Thread Robert . Broome
I have already received helpful feedback and want to thank D. Nicholls. when i compile as root, sudo gfortran etc. this works. The resulting executable is owned by root however. So as expected the problem is permissions. I don't know how to make a call to gfortran work properly as a user. Any

DL damaged

2012-12-26 Thread Robert . Broome
I am getting the following error: dyld: DYLD_ environment variables being ignored because main executable (sudo) is setuid or setgid. Because of an earlier misconfiguration problem that I caused, in order to run gfortran, I have to run gfortran as root. I am hoping someone will be able to help me

Re: DL damaged

2012-12-26 Thread Lawrence Velázquez
On Dec 26, 2012, at 12:49 PM, robert.bro...@softhome.net wrote: I am getting the following error: dyld: DYLD_ environment variables being ignored because main executable (sudo) is setuid or setgid. [snip] Has anyone had any experience with this error message and can you tell me what is

Re: matplotlib with X11

2012-12-26 Thread Adam Mercer
On Sat, Dec 22, 2012 at 2:00 PM, Corey Cooke cdco...@vt.edu wrote: Does anyone know how to set up matplotlib (right now i'm using py27-matplotlib) such that it uses X11 to draw the windows so they can be viewed from a remote SSH session? I've tried changing the backend in

Re: can't write to /var/folders

2012-12-26 Thread David Nicholls
A simple work around would be to change the permissions on the executable, using either 'chown' from the command line or 'getinfo' in Finder. DN On 27/12/2012, at 4:43 AM, robert.bro...@softhome.net wrote: I have already received helpful feedback and want to thank D. Nicholls. when i compile

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Clemens Lang
On Wed, Dec 26, 2012 at 08:19:23AM -0600, Peng Yu wrote: $ otool -L /opt/local/bin/wish8.6 /opt/local/lib:/opt/local/lib/libtk8.6.dylib (compatibility version 8.6.0, current version 8.6.0) That's the problem. The part before (and including) the colon shouldn't be there. This might be a

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 18:30, Clemens Lang c...@macports.org wrote: On Wed, Dec 26, 2012 at 08:19:23AM -0600, Peng Yu wrote: $ otool -L /opt/local/bin/wish8.6 /opt/local/lib:/opt/local/lib/libtk8.6.dylib (compatibility version 8.6.0, current version 8.6.0) That's the problem. The part

Re: DL damaged

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 11:49, Robert Broome wrote: I am getting the following error: dyld: DYLD_ environment variables being ignored because main executable (sudo) is setuid or setgid. You have DYLD_* environment variables set, and this message is informing you that they are being ignored

Re: can't write to /var/folders

2012-12-26 Thread Ryan Schmidt
On Dec 25, 2012, at 21:59, Robert Broome wrote: I use gfortran installed via macports. I am currently at gcc46, with gcc45 installed to support fortran-netcdf. When I try to compile a simple program (which has compiled on this machine several days ago), I get: gfortran -o sorttest

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Peng Yu
On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt ryandes...@macports.org wrote: On Dec 26, 2012, at 18:30, Clemens Lang c...@macports.org wrote: On Wed, Dec 26, 2012 at 08:19:23AM -0600, Peng Yu wrote: $ otool -L /opt/local/bin/wish8.6 /opt/local/lib:/opt/local/lib/libtk8.6.dylib

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird... for the record I don't see this problem on my system. So if you still see this problem after a rebuild, please attach a log of the build to the ticket. What the path of

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Peng Yu
On Wed, Dec 26, 2012 at 8:26 PM, Ryan Schmidt ryandes...@macports.org wrote: On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird... for the record I don't see this problem on my system. So if you still see this problem after a

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 20:29, Peng Yu wrote: On Wed, Dec 26, 2012 at 8:26 PM, Ryan Schmidt wrote: On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird... for the record I don't see this problem on my system. So if you still see