Re: sudo port install tk -quartz problem (related with pymol)

2012-12-27 Thread Peng Yu
On Wed, Dec 26, 2012 at 8:30 PM, Ryan Schmidt ryandes...@macports.org wrote: On Dec 26, 2012, at 20:29, Peng Yu wrote: On Wed, Dec 26, 2012 at 8:26 PM, Ryan Schmidt wrote: On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird...

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-27 Thread Ryan Schmidt
On Dec 27, 2012, at 22:55, Peng Yu pengyu...@gmail.com wrote: I don't get what the solution is to this problem? (BTW, I have attached the log file to the ticket system.) You should be able to run sudo port clean tk sudo port selfupdate sudo port upgrade tk to receive the fixed version of

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Clemens Lang
Hi, On Tue, Dec 25, 2012 at 11:26:17PM -0600, Peng Yu wrote: Could not open /opt/local/lib:/opt/local/lib/libtk8.6.dylib: Error opening or reading file (referenced from /opt/local/bin/wish8.6) DEBUG: Marking /opt/local/bin/wish8.6 as broken what's the output of otool -L

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Peng Yu
On Wed, Dec 26, 2012 at 2:52 AM, Clemens Lang c...@macports.org wrote: Hi, On Tue, Dec 25, 2012 at 11:26:17PM -0600, Peng Yu wrote: Could not open /opt/local/lib:/opt/local/lib/libtk8.6.dylib: Error opening or reading file (referenced from /opt/local/bin/wish8.6) DEBUG: Marking

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Clemens Lang
On Wed, Dec 26, 2012 at 08:19:23AM -0600, Peng Yu wrote: $ otool -L /opt/local/bin/wish8.6 /opt/local/lib:/opt/local/lib/libtk8.6.dylib (compatibility version 8.6.0, current version 8.6.0) That's the problem. The part before (and including) the colon shouldn't be there. This might be a

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 18:30, Clemens Lang c...@macports.org wrote: On Wed, Dec 26, 2012 at 08:19:23AM -0600, Peng Yu wrote: $ otool -L /opt/local/bin/wish8.6 /opt/local/lib:/opt/local/lib/libtk8.6.dylib (compatibility version 8.6.0, current version 8.6.0) That's the problem. The part

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Peng Yu
On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt ryandes...@macports.org wrote: On Dec 26, 2012, at 18:30, Clemens Lang c...@macports.org wrote: On Wed, Dec 26, 2012 at 08:19:23AM -0600, Peng Yu wrote: $ otool -L /opt/local/bin/wish8.6 /opt/local/lib:/opt/local/lib/libtk8.6.dylib

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird... for the record I don't see this problem on my system. So if you still see this problem after a rebuild, please attach a log of the build to the ticket. What the path of

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Peng Yu
On Wed, Dec 26, 2012 at 8:26 PM, Ryan Schmidt ryandes...@macports.org wrote: On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird... for the record I don't see this problem on my system. So if you still see this problem after a

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-26 Thread Ryan Schmidt
On Dec 26, 2012, at 20:29, Peng Yu wrote: On Wed, Dec 26, 2012 at 8:26 PM, Ryan Schmidt wrote: On Dec 26, 2012, at 20:22, Peng Yu wrote: On Wed, Dec 26, 2012 at 7:22 PM, Ryan Schmidt wrote: Yeah that's weird... for the record I don't see this problem on my system. So if you still see

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-25 Thread Peng Yu
On Mon, Dec 24, 2012 at 10:04 PM, Clemens Lang c...@macports.org wrote: Hi, Quote: Please run port -d -y rev-upgrade and use the output to report a bug. Please post the output of the command mentioned. Here are the output. Let me know if there is anything else that I shall provide. DEBUG:

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-24 Thread Clemens Lang
Hi, Quote: Please run port -d -y rev-upgrade and use the output to report a bug. Please post the output of the command mentioned. ___ macports-users mailing list macports-users@lists.macosforge.org

Re: sudo port install tk -quartz problem (related with pymol)

2012-12-24 Thread Ryan Schmidt
On Dec 24, 2012, at 15:40, Peng Yu pengyu...@gmail.com wrote: --- Found 1 broken file(s), matching files to ports Error: Port tk is still broken after rebuiling it more than 3 times. Error: Please run port -d -y rev-upgrade and use the output to report a bug. Can we change it so that it