to use basic authentication. This worked for 0.4 but it seemed
quite slow though. Now with Biomart 0.7 the connection via the reverse
proxy simply times out.
Allan.
--
William Spooner
w...@eaglegenomics.com
http://www.eaglegenomics.com
Hi Syed,
Do you have any timeline on the next BioMart release, and any details
(other than java 1.6 support) on what it will contain?
Thanks,
Will
On 9 Oct 2009, at 06:48, Syed Haider wrote:
I just had a quick run on Fedora's default J 1.6, it doesnt work.
This may well be Fedora's J
records containing that word,
not just equal to it.
cheers,
Richard
--
Richard Holland, BSc MBCS
Finance Director, Eagle Genomics Ltd
M: +44 7500 438846 | E: [EMAIL PROTECTED]
http://www.eaglegenomics.com/
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
.peptide
FILTERS
=wormbase_gene.default.filters.species_selection.Caenorhabditis
elegans|
wormbase_gene
.default.filters.identity_status.LiveVISIBLEPANEL=resultspanel
Thanks in advance,
Will
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
believe that this limitation will be addressed in
the 0.7 BioMart release in may (syed - correct me if wrong)? For now
you need to use gramene.org to get the correct links.
Will
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
that the BioMart developers are working on a
method to load such XML back into WormMart, initialising the query. I
am cc'ing the mart-admin list to see if there is any further insight
on progress.
All the best,
Will
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
or
not
check is based on forward slash.
and unfortunately we only support one entry for exturl from
settings.conf.
cheers
syed
On Fri, 2008-03-28 at 16:54 +, William Spooner wrote:
OK - So I assume that 'http://www.ebi.ac.uk' is substituted with
whatever is in 'exturl'? In which case I can
email: [EMAIL PROTECTED]
--
==
Syed Haider.
EMBL-European Bioinformatics Institute
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
==
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
and Uniprot
e.g exturl|http://www.ebi.ac.uk/msd-srv/atlas?id=%s
added this on the requirements list for 0.8 release.
cheers
syed
On Fri, 2008-03-28 at 16:18 +, William Spooner wrote:
Hi Syed,
The URLs are internal (relative) to www.wormbase.org, or
dev.wormbase.org, or one of the wormbase
, Hinxton,
Cambridge CB10 1SD, UK.
==
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
, William Spooner wrote:
on the martview
--
==
Syed Haider.
EMBL-European Bioinformatics Institute
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
==
---
William Spooner
Visiting Scientist
[EMAIL PROTECTED]
Floris
CRS4 Bioinformatics
--
==
Syed Haider.
EMBL-European Bioinformatics Institute
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
==
--
---
William Spooner
WormMart Developer
On Tue, 27 Feb 2007, Ewan Birney wrote:
On 27 Feb 2007, at 14:04, Arek Kasprzyk wrote:
On 22 Feb 2007, at 15:48, Rosienne wrote:
Hi,
a few weeks ago I was attending an Open Door Workshop at the Sanger. I had
occasion to speak to one of your team and mention a couple of problems we
On Tue, 27 Feb 2007, Arek Kasprzyk wrote:
On 27 Feb 2007, at 14:25, Will Spooner wrote:
snip
WormMart has the same gene/transcript (CDS in WormBase's case) issues. I
solve this by 'merging' the multiple transcript values into a single
attribute in the gene_main table. See this example
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