Hi Marcin
I can see given your filter, only one sequence is expected with NO
HEADER attributes, which is not returned. The expected out is:
Sequence
You may specify one attribute for header, say
$query-addAttribute('chromosome_name');
and you will have your sequence when there is only
Dear all,
I have a newbie question.
When I issue this query:
$input = ENSG0204389;
$query = BioMart::Query-new('registry'=$registry,
'virtualSchemaName'='default');
$query-setDataset('hsapiens_gene_ensembl');
$query-addFilter('ensembl_gene_id', [$input]);
Richard,
XML: a Filter tag
Perl API: addFilter
webservice query API: described by type=attributes
martview webpage: displayed in the attributes section
What you are suggesting is for it to be treated solely EITHER as an
Attribute OR as a Filter OR as a third, independent,
On 28 Jun 2007, at 12:23, Bogdan wrote:
Richard,
XML: a Filter tag
Perl API: addFilter
webservice query API: described by type=attributes
martview webpage: displayed in the attributes section
What you are suggesting is for it to be treated solely EITHER as an
Attribute OR as a
Arek,
thank you for replying,
Hope you can put up with that for a little while longer
of course :)
Bogdan
Dear all,
when using the 'XML' button in martview, and asking for
upstream_flank, we may get something similar to this:
Filter name = upstream_flank value = 800/
Attribute name = gene_stable_id /
Attribute name = 5utr /
In the system I'm building, there's an automatic check for the
correctness
Dear Richard,
thank you for explanation.
However, as far as I understand both the response to
'?type=filtersdataset=' and the 'XML' page in martview are generated
by the same web-services API;
if this is the case, then why do we find 'upstream_flank' in
'attributes' in one case, and 'filters'
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Currently the system does this for AttributeFilters:
XML: a Filter tag
Perl API: addFilter
webservice query API: described by type=attributes
martview webpage: displayed in the attributes section
What you are suggesting is for it to be
