[Matplotlib-users] How to shift colormap?

2011-11-06 Thread klo uo
Like in Basemap examples: http://matplotlib.github.com/basemap/users/examples.html (topographic image in the middle of page) ground 0 has some yellow/orange color making seas and oceans coasts in that same, color instead light blue (as we'd all expect I guess) So how to shift this particular

[Matplotlib-users] Question about Basemap example

2011-11-08 Thread klo uo
from http://matplotlib.github.com/basemap/users/examples.html: from mpl_toolkits.basemap import Basemap, shiftgrid, cm import numpy as np import matplotlib.pyplot as plt from netCDF4 import Dataset # read in etopo5 topography/bathymetry. etopodata =\

Re: [Matplotlib-users] Question about Basemap example

2011-11-08 Thread klo uo
OK, soon I found out that m.xmax... are dependant on projection, and I wasn't using Lambert projection For default projection result are degrees and this way meters it sems On Tue, Nov 8, 2011 at 9:13 PM, klo uo klo...@gmail.com wrote: from http://matplotlib.github.com/basemap/users

Re: [Matplotlib-users] How to shift colormap?

2011-11-11 Thread klo uo
) that would let me use GUI with some sliders so that I can try adjust matplotlib colormap? On Sun, Nov 6, 2011 at 9:58 PM, klo uo klo...@gmail.com wrote: Like in Basemap examples: http://matplotlib.github.com/basemap/users/examples.html (topographic image in the middle of page) ground 0 has some

Re: [Matplotlib-users] How to shift colormap?

2011-11-11 Thread klo uo
Or are matplotlib colormaps compatible with any other programs? On Fri, Nov 11, 2011 at 4:19 PM, klo uo klo...@gmail.com wrote: So I want to ask this question differently: Is there some tool (Inkscape, CorelDraw, Photoshop, ... anything) that would let me use GUI with some sliders so that I

Re: [Matplotlib-users] How to shift colormap?

2011-11-11 Thread klo uo
Thanks Johann, that is exactly what I asked for I knew that matplotlib can do GUI tricks but I didn't felt skilled to go there. Seeing you code it seems easy now, but it's always like that after you see the solution :D Cheers On Fri, Nov 11, 2011 at 6:05 PM, johanngoetz jgo...@ucla.edu wrote:

Re: [Matplotlib-users] MODIS data and true-color plotting

2011-11-13 Thread klo uo
I think that paths needed to be passed to CPP/LDFLAGS like this: CPPFLAGS=-I/usr/include/hdf LDFLAGS=-L/usr/lib ./configure --enable-hdf4 make then also package is dependent on latest hdf5 to be build (1.8.7), so installing it globally would break possible dependencies in any packaging system,

[Matplotlib-users] pcolor - color values argument

2011-11-15 Thread klo uo
Quote: matplotlib.pyplot.pcolor(*args, **kwargs) Create a pseudocolor plot of a 2-D array. C is the array of color values. I tried to see how can I map custom color values to example array, but seems hard to understand. I

Re: [Matplotlib-users] Visualizing data for scientists and engineers

2011-11-15 Thread klo uo
It's same problem for which I asked assistance here: http://www.mail-archive.com/matplotlib-users@lists.sourceforge.net/msg22520.html There, Johann provided nifty script with slider, with which help user can shift colormap and get more meaningful image Also speaking about great Basemap package,

Re: [Matplotlib-users] Today's XKCD

2011-11-17 Thread klo uo
I first opened GMail instead Google Reader and you show it to me first :D I don't know half of those projection but I guess I would choose Plate Cartee :D Cheers On Mon, Nov 14, 2011 at 3:28 PM, Michael Droettboom md...@stsci.edu wrote: Sorry for the slightly OT post, but I thought all of the

[Matplotlib-users] UserWarning: Module dateutil was already imported

2011-12-30 Thread klo uo
from mpl_toolkits.basemap import Basemap /usr/local/lib/python2.7/dist-packages/mpl_toolkits/__init__.py:2: UserWarning: Module dateutil was already imported from /usr/local/lib/python2.7/dist-packages/dateutil/__init__.pyc, but /usr/lib/pymodules/python2.7 is being added to sys.path

[Matplotlib-users] Exception in Tkinter callback

2012-01-11 Thread klo uo
Matplotlib 1.1.0 on Ubuntu 11.04 If MPL backand is set to TkAgg, drawing window dialog appears without plot content, and then after closing it, this error is thrown: Exception in Tkinter callback Traceback (most recent call last): File

[Matplotlib-users] How to tell savefig() image size in pixels

2012-01-14 Thread klo uo
I browsed Google, and found mainly outdated code examples (also on scipy cookbook) then some 2008 posts on StackOverflow where at least I find some trace that matplotlib.figure.Figure has some instruments to change output image size, but it's in combination from inches and dpi set. However I just

[Matplotlib-users] Why are bars, errorbars... clipped

2012-03-18 Thread klo uo
Assuming IPython in pylab mode: a = [0.1, 0.2, 0.1] errorbar(arange(3), a, yerr=a-sum(a)/len(a), fmt='ro') Result MPL output clips limit values in two different ways: 1. If GTK backend is used both left and right sides are clipped 2. If IPyhton inline mode is used, only right side is

Re: [Matplotlib-users] Why are bars, errorbars... clipped

2012-03-18 Thread klo uo
On Sun, Mar 18, 2012 at 1:07 PM, Angus McMorland amcm...@gmail.com wrote: The xlim command can be used to set the x limits. For example: xlim(-.5, 2.5) will prevent the points lying on the axis boundaries for your case. Thanks Angus, that worked with ease for separate MPL window, but

Re: [Matplotlib-users] Why are bars, errorbars... clipped

2012-03-18 Thread klo uo
On Sun, Mar 18, 2012 at 1:50 PM, Angus McMorland amcm...@gmail.com wrote: For inline ipython, you want to switch to the object-oriented use of pylab. Something like this should work with xlim. a = [0.1, 0.2, 0.1] fig = plt.figure() ax = fig.add_subplot(111) ax.errorbar(arange(3), a,

Re: [Matplotlib-users] Why are bars, errorbars... clipped

2012-03-18 Thread klo uo
After parsing matplotlibrc, I browsed module where errorbars are defined (axes.py) and tried changing various variables without success. In bar() function (line 4628) there is adjust_xlim = False line which calls line 4768 if set True. So I set it True, to find it's buggy if x starts from 0 (most

[Matplotlib-users] Export 3D plot to 3D file format

2012-03-26 Thread klo uo
Does someone maybe knows of a project that allows exporting MPL 3D plot (mpl_toolkits.mplot3d.Axes3D) to 3D file format, like OBJ, 3DS, BLEND ... any kind? -- This SF email is sponsosred by: Try Windows Azure free for 90

Re: [Matplotlib-users] Export 3D plot to 3D file format

2012-03-27 Thread klo uo
Ah mayavi... I find it complicated for building, and in Ubuntu repository (or launchpad) there is some old version I'll try later today to build it Thanks for your suggestion, Cheers On Tue, Mar 27, 2012 at 11:25 PM, Frédéric Vogt fv...@mso.anu.edu.auwrote: Is the savefig function what you're

[Matplotlib-users] Possible to change MPL color scheme?

2012-07-21 Thread klo uo
Hi, I read previous mail about colormaps which reminded me to a question I had about MPL colors. Colors in MPL plots are dark, and pale, and not is some specific color theme but it's just pale dark. I thought that usually people make plots brighter (as more attractive ;) ) If you can, have a

[Matplotlib-users] Fwd: Possible to change MPL color scheme?

2012-07-21 Thread klo uo
On Sat, Jul 21, 2012 at 7:37 PM, Felix Patzelt wrote: Have you ever been in a talk where someone uses 100% green on a slide? The result is usually that no one can see what is shown unless it is a really large green area. No, but I would have expected in that case appropriate bg. I've seen a

Re: [Matplotlib-users] Fwd: Possible to change MPL color scheme?

2012-07-21 Thread klo uo
Ah all right, thanks for the tips :) I somehow missed that setting while browsing matplotlibrc Cheers On Sat, Jul 21, 2012 at 9:33 PM, Felix Patzelt wrote: You want this? import matplotlib as mpl mpl.rcParams['axes.color_cycle'] = ['#FF', '#00FF00', '#FF', '#00',

Re: [Matplotlib-users] Possible to change MPL color scheme?

2012-07-22 Thread klo uo
Thanks for your reply Ben, On Sun, Jul 22, 2012 at 4:39 PM, Benjamin Root wrote: As for the assertion that HTML colors aren't used, that is incorrect. The named colors follow the HTML list. Here is our list: https://github.com/matplotlib/matplotlib/blob/master/lib/matplotlib/colors.py#L62

[Matplotlib-users] Background basemaps in Basemap

2012-08-24 Thread klo uo
I wanted to overlay some plot over map, and thought to use one of provided background maps that come with Basemap Result isn't that great as expected: loading bluemarble map took 1GB memory, and zooming i.e. Europe region on 1920x1080 screen is too blurred w/o details. As a consequence, using

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-24 Thread klo uo
On Sat, Aug 25, 2012 at 1:26 AM, Jeff Whitaker wrote: Oh sure, it's simple! http://www.google.com/patents?id=J4YOEBAJdq=6618053 Hi Jeff, thanks for your reply. I was hoping to get response if there are ideas how this unfortunate performance can be avoided. If there are some thoughts or

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-25 Thread klo uo
On Sat, Aug 25, 2012 at 3:24 PM, Jeff Whitaker jsw...@fastmail.fm wrote: It looks like you are fetching an image over a specified region and displaying it with matplotlib. That's very useful, but it doesn't solve the zooming problem you mentioned. Still, it's a good start and would be nice to

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-25 Thread klo uo
On Sat, Aug 25, 2012 at 5:57 PM, Jeff Whitaker wrote: tilecache.org looks relevant too. This is like more advanced, on a higher level. I imagine if you plan to add some interaction to Basemap, it would be fantastic, to say at least. While reading Google patent you linked the other day, I came

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-25 Thread klo uo
On Sat, Aug 25, 2012 at 5:50 PM, Jeff Whitaker wrote: Maybe such a thing could be built using owslib? http://geopython.github.com/OWSLib/ This is interesting. I didn't know about this module Using either simple REST (urllib) to access webservices or depend on additional module which exposes

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-25 Thread klo uo
Export Map (http://atlas.resources.ca.gov/arcgis/SDK/REST/export.html) seems like only function needed, but more knowledge about Basemap is needed, as my main problem with it is fitting projections right. I tried to overlay arcgis map over some Basemap projections like: m=Basemap(...)

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-25 Thread klo uo
Result with coastlines overlay attached! Here is attachment Hm, image needs to be approved by moderator... Here is a link to it: http://i.imgur.com/1ZMoU.png -- Live Security Virtual Conference Exclusive live event

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-26 Thread klo uo
On Sun, Aug 26, 2012 at 12:18 AM, Jeff Whitaker jsw...@fastmail.fm wrote: Klo: The image in interpolated to the Basemap projection region. This is slow - the main reason to use the WMS is to avoid this by having it done on the server side. All right, that's the right way anyway The trick

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-26 Thread klo uo
As said later today I'll look at Nokia maps and then will try to look for WMS servers. Nokia map services are OK, and can be used even without applying for free account, but they brand every map with their logo even for professional licence. REST services

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-27 Thread klo uo
On Mon, Aug 27, 2012 at 2:34 PM, Jeff Whitaker wrote: Klo: WMS servers use EPSG codes to define map projections - Basemap uses a set of kwargs. We need some way of inferring epsg codes from the Basemap kwargs. Alternatively, we could extend Basemap so it can accept EPSG codes. But, there

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-28 Thread klo uo
On Mon, Aug 27, 2012 at 9:32 PM, Jeff Whitaker wrote: Klo: Yes. And vice versa, some of those 4500 projections aren't supported by Basemap. Anyway, I went ahead and created a prototype 'wmsmap' method. You can try it by cloning my fork (https://github.com/jswhit/basemap) and running

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-28 Thread klo uo
Jeff it looks great, everything is parametrized including server name and map name, so it should work for any additional service. However on Windows with Python 2.7 and Basemap 1.0.5 I get an error while trying to run the script: Klo: Just added a pull request for this

Re: [Matplotlib-users] Background basemaps in Basemap

2012-08-28 Thread klo uo
Jeff, I just thought to mention this: function name wmsmap maybe should be changed to restmap as for WMS servers will need to do another template. Here is example urllib call for sample WMS function GetMap: basemap_url = \

[Matplotlib-users] Building Basemap on Windows

2012-08-30 Thread klo uo
So I forked then cloned huge Basemap repository with idea to test latest code README file says it needs geos library, which README suggest: nmake /f makefile.vc MSVC_VER=1500 However, error is inevitable almost always and this time Google suggests that MS does not support C-99 (can't find

Re: [Matplotlib-users] Building Basemap on Windows

2012-08-30 Thread klo uo
On Thu, Aug 30, 2012 at 5:44 PM, Christoph Gohlke wrote: Try to remove 'geos_c' from the list of libraries in setup.py. Works for me. -libraries=['geos_c','geos'])) +libraries=['geos'])) Thanks, that was it. It builds fine

Re: [Matplotlib-users] Accessing WMS and ESRI REST services in Matplotlib

2012-10-10 Thread klo uo
Hi Rich, On Tue, Oct 9, 2012 at 10:38 PM, Rich Signell wrote: It look like there was a wmsimage method in Basemap that was folded into a arcgisimage method? IIRC, it was named like that in the test cycle, then renamed correctly to arcgis I made my first step in adding WMS method:

Re: [Matplotlib-users] Accessing WMS and ESRI REST services in Matplotlib

2012-10-10 Thread klo uo
On Wed, Oct 10, 2012 at 11:28 PM, Jeff Whitaker wrote: I wonder whether it would be better to use OWSlib (http://geopython.github.com/OWSLib/) for OGS/WMS support, instead of trying to roll our own solution. It only has ElementTree as a dependency. Klo - would you be interested in

Re: [Matplotlib-users] Accessing WMS and ESRI REST services in Matplotlib

2012-10-10 Thread klo uo
On Thu, Oct 11, 2012 at 3:31 AM, Jeff Whitaker wrote: But warpimage assumes the image is of global extent - perhaps we could make warpimage smart enough to get the georeferencing from the wms instance but that would require some work. There must be some way to let the WMS server do the image

Re: [Matplotlib-users] Accessing WMS and ESRI REST services in Matplotlib

2012-10-10 Thread klo uo
On Thu, Oct 11, 2012 at 4:40 AM, klo uo wrote: Not sure, but as in example posted, 'img' is HTTPmessage pointing to server, and I can't see how we can deduce georeference as 'wms' object is named arbitrary, it could have been named to anything: What am I talking about? We can deduce from

Re: [Matplotlib-users] Accessing WMS and ESRI REST services in Matplotlib

2012-10-10 Thread klo uo
I guess that's it? warpimage() as it is now, checks if passed image is url, so we can add additional check if image is url, with urlparse to deduce image coordinates and projection if present, then overlay it over already created Basemap object.

Re: [Matplotlib-users] colormap shift

2012-11-05 Thread klo uo
I asked same question with different problem here: http://matplotlib.1069221.n5.nabble.com/How-to-shift-colormap-td18451.html You can see there how to use Gimp and create mpl colormap and then later there is nifty code that will allow you to shift colormaps with a slider From your problem I

Re: [Matplotlib-users] ANN: matplotlib 1.2.0

2012-11-08 Thread klo uo
Congratulation, team! Binary installer for 32-bit Windows, built using python.org's 2.7 and Numpy 1.6.2 is listed but file is not found. I guess it's boiling now, and will be available soon ;) On Fri, Nov 9, 2012 at 1:57 AM, Michael Droettboom md...@stsci.edu wrote: After months of hard work

[Matplotlib-users] 'module' object has no attribute 'instancemethod'

2013-05-25 Thread klo uo
Out of the blue, I started getting this messages while plotting with MPL 1.2.1: Traceback (most recent call last): File C:\Python27\lib\site-packages\matplotlib\backends\backend_qt4.py, line 244, in mouseMoveEvent

[Matplotlib-users] Fwd: 'module' object has no attribute 'instancemethod'

2013-05-25 Thread klo uo
Ah, right. There was indeed new.pyc file in folder I was working in. Thanks On Sat, May 25, 2013 at 9:47 PM, Christoph Gohlke cgoh...@uci.edu wrote: On 5/25/2013 12:37 PM, klo uo wrote: Out of the blue, I started getting this messages while plotting with MPL 1.2.1

[Matplotlib-users] Font issue while trying to save PS/EPS/SVG but not PDF

2013-05-28 Thread klo uo
As suggested by Phil, I'm reposting github issue #2067 on this list. I use MPL 1.2.1 on Windows with Python 2.7.5. In my matplotlibrc I've set sans-serif font to Segoe UI. Now, if I try to save a plot to PDF, MPL saves it fine, but if I try PS or EPS or SVG it fails, because of the font set. (If

Re: [Matplotlib-users] Font issue while trying to save PS/EPS/SVG but not PDF

2013-05-28 Thread klo uo
On Tue, May 28, 2013 at 4:40 PM, Michael Droettboom wrote: Which version of Windows are you on? Apparently, the Segoe UI font is different on Windows 7 and 8 and I'd like to download and test with the correct one. I'm on Windows XP, but problem was with the name of the font. This font's name

Re: [Matplotlib-users] Plotting NOAA grib2 data in basemap

2014-01-29 Thread klo uo
IMHO that's the most straightforward approach. He can use masked array for empty blocks (if contour data doesn't already contain the holes as masked array) and apply inpainting, then draw the land. For more details about inpainting: http://stackoverflow.com/a/17125125/992005 On Wed, Jan 29, 2014