Re: [uf-discuss] species microformats OpenSearch

2006-12-07 Thread Andy Mabbett
In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes

ou wrote (END)
[David Shorthouse wrote:]

Please note my earlier comment on quoting formats.

And this is exactly what uBio already provides with their LinkIT tool
(http://names.mbl.edu/tools/linkit.php) and essentially nullifies the
need for microformat mark-up.

I fail to see how you can claim that the uBio nullifies the need for
microformat markup; when it provides virtually none of the functionally
provided by microformats. I refer you again to the initial proposal:

Imagine viewing a web page with a reference to a species - and
being able to use an add-on to you browser to be taken directly
to information about that species, on, say, Wikipedia, or
Wikispecies, or Google Images, or another site, such as in an
academic database, of your choosing.

Your software would automatically know to search site A if the
scientific name referred to a moth, site B for a bird, and site
C for a plant - and you could set your preferences as to which
sites those were to be, and in which order two or more were to
be searched (e.g. for moths, try UK Moths
(http://ukmoths.org.uk/) first, if not found try The Global
Lepidoptera Names Index
(http://www.nhm.ac.uk/research-curation/projects/lepindex/index.h
tml)).

Or supposing someone writes a long, chronologically-ordered web
page about all the birds, insects, mammals and plants they saw
on a wildlife safari, with lots of prose description about the
paces where they saw them and the people they were with, but you
want to extract a list of species, sorted into alphabetical
order within taxonomic class (birds first, then insects then...)
or in taxonomic order.

Those are just two of the things a species microformat might
do for you.

Please explain how uBio does those things; taking:

http://www.westmidlandbirdclub.com/ladywalk/latest
and:
http://en.wikipedia.org/wiki/Black-tailed_godwit

as test cases.

I previously argued with you on my forum (http://canadianarachnology.dy
ndns.org/forum/viewtopic.php?t=118) this point and you provided no
compelling argument for me to spend effort marking up my pages with
microformat.

I wasn't aware that you were the person with whom I'd had that
discussion, some months ago. Nor was I aware that the discussion had
continued, since your forum does not appear to send e-mail notices of
further replies (leastways , I received none). I note also that Charles
Roper, my co-proponent of this proposal, subsequently gave you a lengthy
reply.

A glib reply was not convincing.

Nor was one given. My reply may have been short, but it was accurate and
pertinent.

I argue that using such generic microformats as species or taxon
provides no valuable information  is no better than having binomen.

And I have already shown you how it does; nor is having binomen a bad
thing.

 In fact, I would argue that using such mark-up may dangerously provide
mis-information if not intelligently implemented.

Unfounded scare-mongering.

 Take for example a politically-charged scenario where a genus receives
revision, species renamed, and consequently erroneously struck from a
red-list merely because the name cannot then be found via a
hypothetical web page aggregator that uses microformats.

Such bizarrely hypothetical speculation - not to mention the political
slant - is way outside the scope of microformats.

I have no fundamental problem with microformats; I believe there is a
responsibility here to do it right and not simply provide something
because something is better than nothing.

So do I. However, you don't appear to see, or to appreciate, what the
it is that we're trying to do.

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Re: [uf-discuss] species microformats OpenSearch

2006-12-07 Thread Andy Mabbett
In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes

Please note my earlier comment on quoting formats.
[David Shorthouse wrote:]
Sorry, you'll just have to tolerate it. Until Microsoft updates Office
2007 to deal with this possible bug with text email, I refuse to install
3rd party plug-ins.

Other people using the same software that you use seem to manage; and
nobody has suggested you use a 3rd party plug in.

Imagine viewing a web page with a reference to a species - and
being able to use an add-on to you browser to be taken
directly
to information about that species, on, say, Wikipedia, or
Wikispecies, or Google Images, or another site, such as in an
academic database, of your choosing.

I wrote the above, not you.

[David Shorthouse wrote:]
The key word here is imagine. Please show me where a species
microformat mark-up does this.

That's a ridiculous request - you've already been told, more than once,
that this is a proposal, not a finished product.

 uBio's LinkIT tool recognizes all the binomen on a
submitted webpage

... a web page which must be *manually* submitted...

and creates links to recognized scientific bodies of
work where one can be assured that the name is valid, or to receive
the species' current nomenclature. It would be trivial for them to also
produce a species list from such outputs or to permit a user to select
what
site they would like to be redirected to for more information. This,
without any microformats.

...and again that's hypothetical. Or are there any active proposals to
do that?

Your software would automatically know to search site A if the
scientific name referred to a moth, site B for a bird, and
site
C for a plant

[David Shorthouse wrote:]
And what does a microformat browser plug-in do when it comes across a
species name, _Agathis montana_ if the individual who created the
mark-up did not indicate that this species is a wasp and not a conifer
(they
share the same name, which is perfectly acceptable because they are in
different Kingdoms).

*If* they did not do so, then the result could be, for instance:


http://names.ubio.org/browser/search.php?names=onauthors=onsci=onvern=onsearch_all=Agathis+montana

(aka http://tinyurl.com/voofq )

or, if the user so desires:

http://www.google.co.uk/search?q=%22Agathis+montana%22

Why is that a problem?

The issue of the same name being used for two species, in different
kingdoms, has already been addressed, in previous discussion, to which
you have been referred, but which you appear not to have read.

[David Shorthouse wrote:]
Your copy  pasted post to the forum I maintain was no better than
spam.

That's a lie, and a libel (evidenced, not least by your previous
involvement in discussion in response to that post). Otherwise, feel
free to report me to my ISP.

 Had
you took the time to read through the registration process, you would
have
noticed that email replies are not provided.

Indeed - note that I said that your forum did not do so, not that I
didn't know that it did not do so.

And I have already shown you how it does; nor is having binomen a bad
thing.

[David Shorthouse wrote:]
Sorry, you have not.

I was replying to your assertion, which you have not quoted, that :

I argue that using such generic microformats as
species or taxon provides no valuable
information  is no better than having binomen.

and indeed I have, when I pointed out that your example:

h1span class=speciesTheridion agrifoliae/span Levi,
1957/h1

conveys more, and more semantic, information than simply:

h1Theridion agrifoliae Levi, 1957/h1

 Take for example a politically-charged scenario where a genus
receives
revision, species renamed, and consequently erroneously struck from a
red-list merely because the name cannot then be found via a
hypothetical web page aggregator that uses microformats.

Such bizarrely hypothetical speculation - not to mention the political
slant - is way outside the scope of microformats.

[David Shorthouse wrote:]
And why should it be?

You appear to have a very poor grasp of what microformats are, and what
they are for. Once again, I refer you to the introductory material
recommended to you by Charles Roper.

Are not microformats a step toward the semantic web?

Very much so.

Until you can demonstrate how microformats for taxa are linked to works
like Species2000  there is
an obvious attempt to accommodate the very dynamic and often problematic
nature of binomen (e.g. with ties to LSIDs), I won't mark-up any of the
species pages I host

The option to do those things *is* already demonstrated on the pages to
which you have previously been referred; there is no intention to
mandate such links.

You have a very specific need (or, rather, wish) which the proposal
caters for completely; it does not cater for your apparent wish to
impose your methodology on others.


Re: [uf-discuss] species microformats OpenSearch

2006-12-07 Thread Andy Mabbett
In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes

 my forum (http://canadianarachnology.dyndns.org/forum/viewtopic.php?t=
118)

It appears that Davis has now wiped the discussion of microformats from
the forum on his website!

-- 
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Say NO! to compulsory ID Cards:  http://www.no2id.net/

Free Our Data:  http://www.freeourdata.org.uk
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Re: [uf-discuss] species microformats OpenSearch

2006-12-07 Thread Andy Mabbett
In message [EMAIL PROTECTED], Andy Mabbett
[EMAIL PROTECTED] writes

In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes

 my forum (http://canadianarachnology.dyndns.org/forum/viewtopic.php?t=
118)

It appears that
David
 has now wiped the discussion of microformats from the forum on his
website!

It's cached here:

http://209.85.135.104/search?q=cache:ao83KPzUMGIJ:canadianarachnology.dyndns.org/forum/viewtopic.php%3Ft%3D118%26sid%3D711c2796371cee4f6a4c12be
0577d4df+microformats+site:http://canadianarachnology.dyndns.org/forum/hl=engl=ukct=clnkcd=1


(aka http://tinyurl.com/y6wlsw )

and I gave a copy saved should anyone need it once that's flushed.

-- 
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Say NO! to compulsory ID Cards:  http://www.no2id.net/

Free Our Data:  http://www.freeourdata.org.uk
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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Scott Reynen

On Dec 6, 2006, at 1:14 AM, Shorthouse, David wrote:

To that end, I now make use of uBio LSIDs  marked-up species pages  
with:


h1span class=species urn:lsid:ubio.org:namebank:2029133Theridion
agrifoliae/span Levi, 1957/h1

.in the hopes that uBio's and other LSIDs will eventually  
contribute to the
semantic web in a taxonomically intelligent way. This in my opinion  
is the

way to go with microformats.


Hi David.  Welcome to the list.  The above seems to me very unlikely  
to be adopted by HTML publishers.  That LSID URN refers to an RDF  
resource, and RDF is not intended to be consumed by humans.   
Microformats are for humans first.  Also, the RDF resource lists the  
canonical name as Theridion agrifoliae, so that alone should be  
canonically descriptive, right?  What exactly is the benefit of  
repeating this information in the class when it's already in the  
content?


http://names.ubio.org/authority/metadata.php? 
lsid=urn:lsid:ubio.org:namebank:2029133



I simply cannot comprehend how something like:

h1span class=speciesTheridion agrifoliae/span Levi, 1957/h1

.could ever contribute to the semantic web in a meaningful way   
will stand
the test of taxonomic revisions (i.e how do the current species  
microformats

deal with synonyms, homonyms, and other recognized nomenclature?).


Synonyms and other nomenclature are covered by abbr, e.g.:

Along came a abbr title=Theridion agrifoliae  
class=speciesspider/abbr and sat down beside her.


This keeps the more precise version accessible to human readers  
(unlike class names), without requiring them to read it.


Homonyms should be irrelevant to markup, as parsers read only HTML  
text, not audio.


If there are real limitations to the simpler solution, please  
describe them in more detail.  It would be especially helpful if you  
have content you can try marking up and describe the specific  
problems you face, to keep away from hypotheticals.  But if you're  
just looking for a more general syntax for these semantics, you may  
want to just use RDF instead of microformats.  We're not trying to  
mark up everything here - just enough to be useful.


Regarding OpenSearch, anyone can return microformat results in  
OpenSearch format, but I don't know of anyone doing so yet.   
Technorati and Alexa are both running early microformat aggregators,  
but the species microformat is just getting started so there's not  
much to aggregate yet.


Peace,
Scott
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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Andy Mabbett
In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes


I am a relative newcomer to microformats and come with a biological sciences
background so am most interested in the species microformat group of
discussions (http://microformats.org/wiki/species).

It's good to have you aboard.

Rod Page and I with contributions from Charles Roper have been having an
interesting discussion about OpenSearch on his iSpecies
(http://darwin.zoology.gla.ac.uk/~rpage/ispecies/) blog
(http://ispecies.blogspot.com/) as it relates to The Nearctic Spider
Database's use of some software called Zoom Search.

I couldn't find that discussion. Can you post specific URL(s), please?

 Of particular concern to
me is:

1) using correct  appropriate nomenclature and,
2) providing a means to aggregate the sorts of species pages produced as
exemplified by The Nearctic Spider Database
(http://canadianarachnology.dyndns.org/data/canada_spiders/).

Both of which are allowed BUT NOT ENFORCED by the proposal as it stands.

To that end, I now make use of uBio LSIDs  marked-up species pages with:

h1span class=species urn:lsid:ubio.org:namebank:2029133Theridion
agrifoliae/span Levi, 1957/h1

Your mark-up does not match the current proposal; the name will change
from species; the URN in your example is not visible, and you have not
(though that's optional) marked up the authority.

.in the hopes that uBio's and other LSIDs will eventually contribute to the
semantic web in a taxonomically intelligent way.

Note that that's a hypothetical future development, which may or may not
happen. Microformats are concerned with existing practices.

This in my opinion is the way to go with microformats.

What, specifically is?


I simply cannot comprehend how something like:

h1span class=speciesTheridion agrifoliae/span Levi, 1957/h1

.could ever contribute to the semantic web in a meaningful way

I'm sorry that you cannot see that; and I hope to be able to persuade
you otherwise - but note that your lack of comprehension in that regard
is not a failing on behalf of the proposal. At the very least, your
example conveys more, and more semantic, information than simply:

h1Theridion agrifoliae Levi, 1957/h1

 will stand the test of taxonomic revisions

How does plain text do that?

As well as allowing a professional biologist to mark up the sort of
thing you deal with, the proposal is intended to allow an author to
indicate that in, say:

I saw a Blackbird in John's garden

or

Birds seen from HMS Beagle included Diomedea exulans

or
We recommend that you buy our Rose 'peace' for your gardens

that Blackbird, Diomedea exulans and Rose 'peace'  are species,
and not garden or Beagle.

As Bruce D'Arcus wrote earlier today:

in the real practical world out there, people want to describe
what they want to describe; not to conform to some limited set
of terms that only get agreed to through some tortuous process
of which the vast majority of people couldn't be bothered.

(i.e how do the current species microformats
deal with synonyms, homonyms, and other recognized nomenclature?).

I believe this has already been answered; though note that there are no
current species microformats, only a proposal for discussion.

-- 
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Say NO! to compulsory ID Cards:  http://www.no2id.net/

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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Benjamin West

.could ever contribute to the semantic web in a meaningful way  will stand
the test of taxonomic revisions

I agree with this. It's unclear to me how the current proposal even
relates to the research gathered, and what use cases it might support.
Typically, microformat proposals are heavily influenced by the
analysis of examples collected.  I've tried doing this work at
http://microformats.org/wiki/species-examples-regrouped.

Most of the useful examples look similar to one of the sites you mentioned:
a
 href=/data/spiders/14441
 onMouseOver=window.status='';return true
 title='Click for species description'
iAculepeira carbonarioides/i
(Keyserling, 1892)
/a

Looks to me like most mentions of species don't contain much
information about them, but rather link to to another page that does.
To me this resembles tagging, where species mentioned is the tag, and
the endpoint of the url is the resource representative of the tag.

Perhaps with further analysis, we can modify hReview or xFolk to be
useful for species, in order to model what is actually happening in
the market.

Can you:
* elaborate on the kinds of use cases you would expect a species
microformat to support
* confirm whether or not the above model is the most common way of
publishing species mentions
* collect intances of the authoritative resources and their markup of
the species
  * what is the most commonly published information (on the authoritative end)
  * how is it represented (on the authoritative end)

Ben


On 12/5/06, Shorthouse, David [EMAIL PROTECTED] wrote:

Folks,

I am a relative newcomer to microformats and come with a biological sciences
background so am most interested in the species microformat group of
discussions (http://microformats.org/wiki/species).

Rod Page and I with contributions from Charles Roper have been having an
interesting discussion about OpenSearch on his iSpecies
(http://darwin.zoology.gla.ac.uk/~rpage/ispecies/) blog
(http://ispecies.blogspot.com/) as it relates to The Nearctic Spider
Database's use of some software called Zoom Search. Of particular concern to
me is:

1) using correct  appropriate nomenclature and,
2) providing a means to aggregate the sorts of species pages produced as
exemplified by The Nearctic Spider Database
(http://canadianarachnology.dyndns.org/data/canada_spiders/).

To that end, I now make use of uBio LSIDs  marked-up species pages with:

h1span class=species urn:lsid:ubio.org:namebank:2029133Theridion
agrifoliae/span Levi, 1957/h1

.in the hopes that uBio's and other LSIDs will eventually contribute to the
semantic web in a taxonomically intelligent way. This in my opinion is the
way to go with microformats. I simply cannot comprehend how something like:

h1span class=speciesTheridion agrifoliae/span Levi, 1957/h1

.could ever contribute to the semantic web in a meaningful way  will stand
the test of taxonomic revisions (i.e how do the current species microformats
deal with synonyms, homonyms, and other recognized nomenclature?).

Finally, what steps have been taken to aggregate or make use of species
microformats and can OpenSearch play some sort of role here in taking the
next step?

David P. Shorthouse
--
Department of Biological Sciences
CW-403, Biological Sciences Centre
University of Alberta
Edmonton, AB   T6G 2E9
Phone: 1-780-492-3080
mailto:[EMAIL PROTECTED]
http://canadianarachnology.webhop.net
http://arachnidforum.webhop.net
--



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RE: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Shorthouse, David
 .could ever contribute to the semantic web in a meaningful way  will
stand
 the test of taxonomic revisions
I agree with this. It's unclear to me how the current proposal even
relates to the research gathered, and what use cases it might support.
Typically, microformat proposals are heavily influenced by the
analysis of examples collected.  I've tried doing this work at
http://microformats.org/wiki/species-examples-regrouped.

Most of the useful examples look similar to one of the sites you mentioned:
a
  href=/data/spiders/14441
  onMouseOver=window.status='';return true
  title='Click for species description'
 iAculepeira carbonarioides/i
 (Keyserling, 1892)
/a

Looks to me like most mentions of species don't contain much
information about them, but rather link to to another page that does.
To me this resembles tagging, where species mentioned is the tag, and
the endpoint of the url is the resource representative of the tag.
[David Shorthouse wrote:] 

Indeed, this is a lot like tagging and are nothing more than links to other
species pages in an attempt to permit users a chance to quickly get to
information about other species in the same Genus as the one on the
currently visible page. Also in a trivial way, this is to permit search
engine spiders a chance to navigate the thousands of pages.

What is actually more useful from a taxonomic standpoint are the Synonyms
and Other Recognized Nomenclature tables on each species page that are the
1:1 mappings of historic nomenclature to that currently recognized. These of
course also have LSIDs.

Perhaps with further analysis, we can modify hReview or xFolk to be
useful for species, in order to model what is actually happening in
the market.

Can you:
* elaborate on the kinds of use cases you would expect a species
microformat to support
[David Shorthouse wrote:] 
What I would ultimately hope for is a means to aggregate such species pages
across multiple resources. This means some sort of scaffolding that is
intelligent enough to know that a species with a microformat for Lycosa
fuscula Thorell, 1875 and another for Pardosa fuscula (Thorell, 1875) refer
to the very same species. A browser plug-in that found species microformats
on the page could highlight these  provide something like a floating div to
indicate current nomenclature in the event that a tagged name is not the
currently recognized name. This would permit one unfamiliar (or familiar)
with the species an opportunity to quickly recognize that the provided page
may have useful information, but that the nomenclature is dated.

* confirm whether or not the above model is the most common way of
publishing species mentions
[David Shorthouse wrote:] 
In fact, there is no model. The vast majority of similar species pages have
no common ground, no tagging, and are merely free-form text with images.

* collect intances of the authoritative resources and their markup of
the species
   * what is the most commonly published information (on the authoritative
end)
[David Shorthouse wrote:] 
These would be peer-reviewed publications, most of which are paper-based.
The ICZN and other organization have their rule-set for what constitutes a
new species name, but there is little in place to programmatically tap into
that data, though many organizations are making steps toward that ultimate
goal. Speaking about spiders, the authoritative work for their nomenclature
is the World Spider Catalog:
http://research.amnh.org/entomology/spiders/catalog/INTRO1.html, which is
essentially an HTML representation of a paper-based publication with no
means to programmatically tap into the data.

   * how is it represented (on the authoritative end)
[David Shorthouse wrote:] 
Unfortunately, I can't speak to that.

Ben

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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Andy Mabbett
In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes

Rod Page and I with contributions from Charles Roper have been having an
interesting discussion about OpenSearch on his iSpecies
(http://darwin.zoology.gla.ac.uk/~rpage/ispecies/) blog
(http://ispecies.blogspot.com/) as it relates to The Nearctic Spider
Database's use of some software called Zoom Search.

I couldn't find that discussion. Can you post specific URL(s), please?

You didn't write that; I did.

[David Shorthouse wrote:]

Please use a more standard quoting method, so that it's more apparent
what you are saying, and so that what you're quoting doesn't appear to
have been written by you. Thank you.

If you're a windows user, you may find QuoteRight:

http://freestuff.grok.co.uk/quoteright/index.html

which is freeware, useful; though I believe that your mail client will
support proper quoting by itself.

You may also find:

http://www.usenet.org.uk/ukpost.html

informative (section 3 especially) even though it's specifically aimed
at uk.* usenet newsgroups.

http://www.blogger.com/comment.g?blogID=18671685postID=116507514354753306

Thank you. I see that Charles pointed you at some of the introductory
pages about Microformats, which should have allayed some of the concerns
and misapprehensions in your original post here.

Microformats are concerned with existing practices.
[David Shorthouse wrote:]
Which are?

...Documented on the *.examples pages.

This in my opinion is the way to go with microformats.

What, specifically is?
[David Shorthouse wrote:]
Linking microformats with a system to track nomenclature like LSIDs  thus
elevate the human-readable aspect of these to something more
programmatically  taxonomically useful.

Then you appear to have a fundamental misunderstanding of what
microformats are about. You also appear to give an answer specific to
species, when your previous comment was apparently about microformats,
plural and general.

I simply cannot comprehend how something like:

h1span class=speciesTheridion agrifoliae/span Levi, 1957/h1

.could ever contribute to the semantic web in a meaningful way

I'm sorry that you cannot see that; and I hope to be able to persuade
you otherwise - but note that your lack of comprehension in that regard
is not a failing on behalf of the proposal.
[David Shorthouse wrote:]
And this gets me on-board  supportive of microformats how?

Why would you expect your admitted lack of comprehension to do that?


 will stand the test of taxonomic revisions

How does plain text do that?
[David Shorthouse wrote:]
It doesn't. I don't follow your question. How do microformats do that?

They are not intended to. Why would you suppose otherwise.

LSIDs CAN.

Indeed. And LSIDs could be marked up, using the current proposal.

As well as allowing a professional biologist to mark up the sort of
thing you deal with, the proposal is intended to allow an author to
indicate that in, say:

I saw a Blackbird in John's garden

or

Birds seen from HMS Beagle included Diomedea exulans

or
We recommend that you buy our Rose 'peace' for your gardens

that Blackbird, Diomedea exulans and Rose 'peace'  are species,
and not garden or Beagle.
[David Shorthouse wrote:]
These are rather trivial examples.

They are common examples.

As Bruce D'Arcus wrote earlier today:

in the real practical world out there, people want to describe
what they want to describe; not to conform to some limited set
of terms that only get agreed to through some tortuous process
of which the vast majority of people couldn't be bothered.
[David Shorthouse wrote:]
Sounds like microformats to the majority of species page providers in
museums  other institutions.

You have spoken to them all?!?

In any case, microformats are not just for people in museums and other
institutions.

(i.e how do the current species microformats
deal with synonyms, homonyms, and other recognized nomenclature?).

I believe this has already been answered; though note that there are no
current species microformats, only a proposal for discussion.
[David Shorthouse wrote:]
So should I bother marking-up my species pages now or wait until there is
evidence that they are actually being used in a taxonomically rigorous
manner?

Why would you expect them to be used in such a manner? That's not the
problem they're intended to solve.

-- 
Andy Mabbett
Say NO! to compulsory ID Cards:  http://www.no2id.net/

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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Scott Reynen

On Dec 6, 2006, at 5:35 PM, Andy Mabbett wrote:

.could ever contribute to the semantic web in a meaningful way   
will stand

the test of taxonomic revisions

I agree with this.


You may well be right - but since dealing with taxonomic  
revisions is

entirely outside the scope of uFs, so what?


I think I agree with Andy on this, but I'm finding it difficult to  
read past what appears to me to be unhelpful hostility.


People change names, but hCard doesn't account for this.  Publishers  
are expected to update their hCards when names change, or have  
invalid hCards, because name changes are an edge case that shouldn't  
inconvenience publishers in general by making the microformat less  
clear.  Are species name changes any different?


Peace,
Scott

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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Andy Mabbett
In message [EMAIL PROTECTED], Scott
Reynen [EMAIL PROTECTED] writes

On Dec 6, 2006, at 5:35 PM, Andy Mabbett wrote:

 .could ever contribute to the semantic web in a meaningful way 
will stand
 the test of taxonomic revisions
 I agree with this.

 You may well be right - but since dealing with taxonomic
revisions is
 entirely outside the scope of uFs, so what?

I think I agree with Andy on this, but I'm finding it difficult to
read past what appears to me to be unhelpful hostility.

I'm trying not to let such attitudes get to me.

People change names, but hCard doesn't account for this.  Publishers
are expected to update their hCards when names change, or have  invalid
hCards, because name changes are an edge case that shouldn't
inconvenience publishers in general by making the microformat less
clear.  Are species name changes any different?

Yes; there are definitive web sites which will accept a species'
out-of-date binominal name (passed, perhaps, by a user agent/ tool
parsing a microformat according to the current proposal) and return the
definitive current version (or alternatives where a species has been
split into two). There are no equivalents for renamed people.

-- 
Andy Mabbett
Say NO! to compulsory ID Cards:  http://www.no2id.net/

Free Our Data:  http://www.freeourdata.org.uk
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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Andy Mabbett
In message
[EMAIL PROTECTED], Benjamin
West [EMAIL PROTECTED] writes

 What market?

Market may have several meanings:
* the mindshare of developers
* documents on the web
* formats to represent data

 'When I use a word,' Humpty Dumpty said in a rather scornful tone, 'it
means just what I choose it to mean - neither more nor less.' 

-- 
Andy Mabbett
Say NO! to compulsory ID Cards:  http://www.no2id.net/

Free Our Data:  http://www.freeourdata.org.uk
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Re: [uf-discuss] species microformats OpenSearch

2006-12-06 Thread Andy Mabbett
In message [EMAIL PROTECTED], Shorthouse, David
[EMAIL PROTECTED] writes

The advantage of the LSIDs is that they may act as a mapping catalog
that is capable of drawing the lines from old names (or even current
names that have not been fully accepted) to current nomenclature.
Merely using Theridion agrifoliae I would argue is not even enough
for humans.

What proportion of species references *currently on the web* [1] use an
LSID, and what proportion use a binominal or suchlike?

Hint:

Google finds 105 for Theridion agrifoliae; and *zero* for
3561403 + Theridion agrifoliae

Google finds about 504,000 for parus major; and *zero for
384 8440 + parus major


Note also that a search for the above boinominals on the uBio website:

http://names.ubio.org/browser/search.php

returns the relevant LSIDs' one use-case for the microformat would be to
find the binominal on a web page, and pass it to uBio, in order to
return the LSID.


[1] e.g. those at http://microformats.org/wiki/species-examples

-- 
Andy Mabbett
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