[MORPHMET] Re: physignal in geomorph

2015-06-15 Thread Anneke van Heteren
Dear all Thank you very much to those who have replied to my question. It turned out that my data was a 2D matrix instead of a 3D array and that that was causing the problem. Best wishes, Anneke On Thursday, June 11, 2015 at 1:41:55 PM UTC+2, Anneke van Heteren wrote: Dear friends and

[MORPHMET] Landmark Editor -- MorphoJ problem

2015-06-15 Thread a.l.schulz
Hello All, I need to ask a rather silly question for which I imagine there is a simple solution ... but I just can't figure it out. I've created a landmark file in IDAV Landmark Editor and exported an NTSYSpc (.dta) file for it. I then tried to upload that into MorphoJ, but to no avail. I keep

Re: [MORPHMET] Re: physignal in geomorph

2015-06-15 Thread Emma Sherratt
Anneke, I'm gad you've managed to solve your issue but I need to say that making your data a 3D array shouldn't be the fix. library(geomorph) Loading required package: rgl data(plethspecies) Y.gpa-gpagen(plethspecies$land)#GPA-alignment #Test for phylogenetic signal in shape using data

[MORPHMET] Using ImageJ for digitizing on Mac OS X

2015-06-15 Thread Edouard Masson-MacLean
Hello, Is there a guide for the complete beginner on how to use ImageJ instead of tpsdig, especially on how to set the scale before digitizing? Many thanks Edouard - Edouard Masson-MacLean PhD Candidate Room 119 Department of Archaeology

Re: [MORPHMET] Landmark Editor -- MorphoJ problem

2015-06-15 Thread Emma Sherratt
Ari, This issue is probably due to having spaces in the names of your specimens. Find and replace with _ then try again Emma On Monday, June 15, 2015, a.l.schulz ariadne.sch...@gmail.com wrote: Hello All, I need to ask a rather silly question for which I imagine there is a simple solution

Re: [MORPHMET] Using ImageJ for digitizing on Mac OS X

2015-06-15 Thread Vincent Bonhomme
hi there, Analyze Set Scale... + http://microscopy.berkeley.edu/courses/dib/sections/04IPIII/IJsetscale.html hth best, v 2015-06-15 14:59 GMT+02:00 Edouard Masson-MacLean e.massonmacl...@gmail.com : Hello, Is there a guide for the complete beginner on how to use ImageJ instead of

[MORPHMET] Re: Using ImageJ for digitizing on Mac OS X

2015-06-15 Thread Emma Sherratt
Dear Edouard, You can find a comprehensive guide by David Polly here: http://www.indiana.edu/~g562/Handouts/Collecting%20Landmarks.pdf And a few tips on digitizing 2D data can be found here:

Re: [MORPHMET] Re: Using ImageJ for digitizing on Mac OS X

2015-06-15 Thread Edouard Masson-MacLean
Dear Emma Many thanks for your help that’s very useful Best Edouard Le 15 juin 2015 à 22:56, Emma Sherratt emma.sherr...@gmail.com a écrit : Dear Edouard, You can find a comprehensive guide by David Polly here: http://www.indiana.edu/~g562/Handouts/Collecting%20Landmarks.pdf And a few tips

Re: [MORPHMET] Using ImageJ for digitizing on Mac OS X

2015-06-15 Thread Edouard Masson-MacLean
Great thanks Vincent! Edouard Le 15 juin 2015 à 21:41, Vincent Bonhomme bonhomme.vinc...@gmail.com a écrit : hi there, Analyze Set Scale... + http://microscopy.berkeley.edu/courses/dib/sections/04IPIII/IJsetscale.html

Re: [MORPHMET] Re: Using ImageJ for digitizing on Mac OS X

2015-06-15 Thread Mauro Cavalcanti
Dear Emma, Thanks, very helpful indeed. Best regards, 2015-06-15 18:56 GMT-03:00 Emma Sherratt emma.sherr...@gmail.com: Dear Edouard, You can find a comprehensive guide by David Polly here: http://www.indiana.edu/~g562/Handouts/Collecting%20Landmarks.pdf And a few tips on digitizing 2D