sig-email_content=webmail>
Libre
de virus. www.avg.com
<http://www.avg.com/email-signature?utm_medium=email_source=link_campaign=sig-email_content=webmail>
<#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
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Neves <536...@students.wits.ac.za>
> Date: 11/6/17 12:59 PM (GMT-05:00)
> To: Guido Rocatti <guidoroca...@gmail.com>
> Cc: MORPHMET <morphmet@morphometrics.org>
> Subject: Re: [MORPHMET] Landmarks coming up funny in MorphoJ
>
> Hi Guido
>
> Thanks so much for
(GMT-05:00) To: Guido
Rocatti <guidoroca...@gmail.com> Cc: MORPHMET <morphmet@morphometrics.org>
Subject: Re: [MORPHMET] Landmarks coming up funny in MorphoJ
Hi Guido
Thanks so much for the suggestion, I'll definitely do that. Is there a
particular way to save a wordpad/notepad file as a
m_medium=email_source=link_campaign=sig-email_content=webmail>
> <#m_7371067766444365814_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
>
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&q
f the
> shell shape in the phylogeny is distributed randomly or follows some
> pattern...
>
> If anybody could suggest me something will be great!
>
> Thank you all in advance!!!
>
> Best wishes,
>
> Jonathan
>
> --
> MORPHMET may be accessed via its webpage at
/10.1371/journal.pone.0187452
Cheers!
Lissa Tallman
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s
>>
>> Professor
>>
>> Department of Ecology, Evolution, and Organismal Biology
>>
>>Department of Statistics
>>
>> Iowa State University
>>
>> www.public.iastate.edu/~dcadams/
>>
>> phone: 515-294-3834
>>
&g
this. It doesn't seem to take the
x,y-coordinate as coordinate pairs, from what I can see it places 26 landmarks
in a horizontal line, instead of the 13 pairs I digitized. Anyone have any
suggestions?
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is if the
shell shape in the phylogeny is distributed randomly or follows some
pattern...
If anybody could suggest me something will be great!
Thank you all in advance!!!
Best wishes,
Jonathan
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You received this message
//maps.google.com/?q=Emilia,+Via+Campi,+103+-+41125+Modena+-+Italy=gmail=g>
>> tel. 0039 059 2058472
>>
>> Adjunct Associate Professor, School of Anatomy, Physiology and Human
>> Biology, The University of Western Australia, 35 Stirling Highway, Crawley
>> WA 6009, A
Modena - Italy
>> <https://maps.google.com/?q=Emilia,+Via+Campi,+103+-+41125+Modena+-+Italy=gmail=g>
>> tel. 0039 059 2058472
>>
>> Adjunct Associate Professor, School of Anatomy, Physiology and Human
>> Biology, The University of Western Australia, 35 Stirling H
e.com/site/alcardini/home/main>
>
> FREE Yellow BOOK on Geometric Morphometrics:
> http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
>
> <http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf>
>
>
.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
>
> ESTIMATE YOUR GLOBAL FOOTPRINT:
> http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
>
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> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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gt;
> _ _ _ _ _ _ _ _ _
>
> F. James Rohlf, Distinguished Prof. Emeritus
>
> [image: univautosig]
>
> Depts. of Anthropology and of Ecology & Evolution
>
>
>
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You received this
autosig]
>
> Depts. of Anthropology and of Ecology & Evolution
>
>
>
>
>
> *From:* Mike Collyer [mailto:mlcoll...@gmail.com]
> *Sent:* Tuesday, October 31, 2017 12:29 PM
> *To:* andrea cardini <alcard...@gmail.com>
> *Cc:* morphmet@morphometrics.org
> *Subjec
partment of Ecology, Evolution, and Organismal Biology
>>Department of Statistics
>> Iowa State University
>> www.public.iastate.edu/~dcadams
>> <http://www.public.iastate.edu/~dcadams>/<http://www.public.iastate.edu/~dcadams/
>> <http://www.public.
ity
>
> www.public.iastate.edu/~dcadams/
>
> phone: 515-294-3834
>
>
>
> *From:* Andrey Lissovsky [mailto:andl...@gmail.com ]
> *Sent:* Tuesday, October 31, 2017 9:26 AM
> *To:* MORPHMET <morp...@morphometrics.org >
> *Cc:* andl...@gmail.com ; vol...@yandex.ru
sovsky [mailto:andlis...@gmail.com]
Sent: Tuesday, October 31, 2017 9:26 AM
To: MORPHMET <morphmet@morphometrics.org>
Cc: andlis...@gmail.com; volk...@yandex.ru
Subject: Re: [MORPHMET] Procrustes fit
Thank you, Andrea
I understand that difference should be tiny, so something goes wrong. I enclos
://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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coordinates, I
hope. But... There is no correlation between PC in MorphoJ and TPSRelw. What is
wrong in my actions? Thank you
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rse4/
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***
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NG
23rd – 27th July 2018, Wales, Dr. Owen Wangensteen
*http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/*
<http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/>
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Sorry. This message is from couple days ago
I already solve this problem reinstalling tpsSmall
Regards
Julio
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ix
Thanks in advance. And sorry for may basic question
Julio
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Thanks in advance if someone can help me to solve this problem
Julio
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land University of Technology
+ 61 7 3138 84467
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and of Ecology & Evolution
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) are available under the 'Zotero' section of the
main project.
Hope you find it useful. Please let me know if you have questions, or encounter
issues with the data.
Best wishes,
M
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ister:
https://www.physalia-courses.org/courses-workshops/course22/
Best regards,
Carlo Pecoraro, Ph.D
Physalia-courses DIRECTOR
i...@physalia-courses.org
http://www.physalia-courses.org/
Twitter: @physacourses
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ses.org
http://www.physalia-courses.org/
Twitter: @physacourses
https://groups.google.com/forum/#!forum/physalia-courses
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-3834
-Original Message-
From: Gonzalo Bilbao [mailto:gonzalobil...@ucm.es]
Sent: Tuesday, September 19, 2017 1:29 PM
To: MORPHMET <morphmet@morphometrics.org>
Cc: gonzobil...@hotmail.com
Subject: [MORPHMET] reading shapes with only semilandmarks, Error in
readland.tps: No landmar
ror message? Is this command suppossed to use only
landmarks (not semilandmarks)?
Alternatively, I was thinking of removing the curves so all my points would be
considered as landmarks, and defining sliders for the gpa alignment...
Thanks in advance for your replies!
Gonzalo
--
tp://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/*
<http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/>
ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP
Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location t
23rd – 27th July 2018, Wales, Dr. Owen Wangensteen
*http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/*
<http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/>
25. ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R
#MVSP
Prof. Pierre Legendre,
data or the coauthors agree). That will take time, as I am not good
at archiving data.
I am sending this to morphmet as well, as others asked me about data
recently.
Good luck with the new package.
Cheers
Andrea
On 17/09/17 18:07, Vincent Bonhomme wrote:
Dear morphmet,
I'm writing a sma
Dear morphmet,
I'm writing a small R package, Modown <https://github.com/vbonhomme/Modown>,
that defines a text-based (I'm aware of their limits), minimalist, readable
by both humans and machines and provides utilities to manipulate it. It
started as a personal need when sweating and sp
Dear Morphmet,
We are looking for the best way to take pictures of rodent teeth in the
field/museum collections. We want something transportable/light, not too
expensive and which take good picture for geometric morphometric purposes.
Does anyone have experience with a Dino-lite? http
istics.com/organiser/oliver-hooker/
6 Hope Park Crescent
Edinburgh
EH8 9NA
+44 (0) 7966500340
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Ciao Daniele,
lo manderei a DZG (dzg.e...@gmail.com) e forse a MORPHMET
(morphmet@morphometrics.org).
Se vinco la lotteria, vengo anch'io!
A presto
Andrea
On 12/09/17 15:34, Daniele Silvestro wrote:
Hello,
I will be teaching a PhD course titled ‘Bayes in practice’ at the
University
at is kernel PCA? Is it of standard use in GM? If not, what do you think
the best answer should be?
(I used PCAs only to show differences between individuals and only relied
on DAs for stating group differences at each one of the 8 successive days
analyzed).
Thanks a lot!
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other way. Shape will be fine.
Best,
Carmelo
Il 4/09/2017 6:49 PM, Ely Raz ha scritto:
Dear All,
I will have a TPS file without scales. How does it effects the
analysis? Any papers or data that I can read or examine?
Thanks
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na). Spain
www.icp.cat
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Dear All,
I will have a TPS file without scales. How does it effects the analysis? Any papers or data that I can read or examine?
Thanks
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attention!
As a reminder, you can download geomorph directly from Github with the
following single line of code:
devtools::install_gituhub(“geomorphR/geomorph”, ref = “Stable”)
Warm regards from Mike, and the geomorph team!
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This could be of interest for quite a few morphometricians.
Many thanks to Joe et al. for making it available online.
Cheers
Andrea
-- Forwarded message --
From: Joe Felsenstein <j...@gs.washington.edu>
Date: Fri, 25 Aug 2017 12:38:36 -0700
Subject: Re: [MORPHMET] Wo
and Amira with IPSDK Bridge. This module is
included with IPSDK Toolkit license.
Link to Visual 2015 express
Link to Python 15 anaconda (3_4.2.0) for windows
http://www.reactivip.com/forum/viewtopic.php?f=8=281
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You
. 2010 Mar
25;464(7288):583-6.
8. Interested candidates should check our group webpage:
http://www.biocenter.helsinki.fi/salazar/index.html
The center of Excellence webpage:
http://www.biocenter.helsinki.fi/bi/evodevo/ECDev.html
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elow is a word cloud based on your responses to
> the question "What do you see as the biggest obstacles to obtaining digital
> morphology data?".
>
>
>
>
> We will continue to post our findings here and again we thank everyone for
> their time and feedback.
performed size correction of nested data?
Thanks in advance,
Michele
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,
Dean, Mike, Emma, and Antigoni (the Geomorph Team)
Dr. Dean C. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
--
MO
n divide my dataset in indidivdual
> teeth in order to perform statistical analyses? and why the combine dataset
> option apparently doesnt work for my shape data?
>
> any suggestion or advise is more than wellcome
>
> best regards
>
> Pablo
>
> --
> M
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"*.
<https://lh3.googleusercontent.com/-LPnca12rjzg/WY1FjymbH4I/AAM/GbaUK7LLEDoOAWo76-ubOQ01aalNwVdJgCLcBGAs/s1600/Wordcloud.jpg>
We will continue to post our findings here and again we thank everyone for
their time and feedback.
Best wishes,
Christy & Emma
Dear Morphmet Commu
. Several examples of
> the use of mixed models in ecology and evolution can be found in the
> literature.
>
> Hope that helps,
>
>
>
> Mark
>
>
>
> Mark C. Belk, Professor of Biology
>
> Brigham Young University
>
> Editor, *Western North American Natur
innovations.
For more information see:
https://science.naturalis.nl/en/about-us/jobs-and-fellowships/jobs/postdoctoral-project-developmental-evolution-jaw-stem-and-crown-group-gnathostomes/
Best wishes,
Martin
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---
You
g discussion emphasizes the
desirability of superseding PCA by algorithms aimed at anthropological
understanding rather than classification or ordination.
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Hi folks,
I would like to signal you this paper where we tried to apply new
covariation/disintegration strategies to the interaction between human left
atrium and left ventricle
All the best
Paolo
https://www.nature.com/articles/s41598-017-06189-w
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continuing advancement of this community's collective
> skills and influence through his expansion and moderation of the
> community's main web-based news outlet and question forum, Morphmet.
>
>
>
> Slice’s work has expanded the range of valid applications of morphometric
>
morphometrics community. Another major contribution is his
commitment to the continuing advancement of this community's collective
skills and influence through his expansion and moderation of the
community's main web-based news outlet and question forum, Morphmet.
Slice’s work has expanded
Thank you.
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elmi
> School of Health Sciences,
> Universiti Sains Malaysia
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
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> "MORPHMET" group.
> To unsubscrib
know where to find articles/user guide about a user friendly
software? I am using a Windows PC and do not have a mac/Linux machine.
Kind regards,
Helmi
School of Health Sciences,
Universiti Sains Malaysia
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---
You
Done Christy
Thanks for share it and for this initiative.
2017-07-27 21:27 GMT-04:00 Christy Anna Hipsley <chips...@unimelb.edu.au>:
> Dear Morphmet Community,
>
> I kindly ask your help in completing a short survey on trends in digital
> morphology data generati
Done!
Diego Astúa
Professor Associado
Depto Zoologia, UFPE
Enviado do meu telefone / Sent from my phone
Em 28 de jul de 2017 11:48 AM, "Christy Anna Hipsley" <
chips...@unimelb.edu.au> escreveu:
> Dear Morphmet Community,
>
> I kindly ask your help in completing
Hi,
Done! Interesting initiative, hope to see the results of the survey.
Best regards,
2017-07-27 22:27 GMT-03:00 Christy Anna Hipsley <chips...@unimelb.edu.au>:
> Dear Morphmet Community,
>
> I kindly ask your help in completing a short survey on trends in digital
> morpholo
Cool initiative!!
done!
2017-07-28 16:59 GMT+02:00 dslice <dsl...@morphometrics.org>:
> Done. -ds
>
>
> On Friday, July 28, 2017 at 10:48:29 AM UTC-4, Christy Anna Hipsley wrote:
>>
>> Dear Morphmet Community,
>>
>> I kindly ask your help in comp
Done. -ds
On Friday, July 28, 2017 at 10:48:29 AM UTC-4, Christy Anna Hipsley wrote:
>
> Dear Morphmet Community,
>
> I kindly ask your help in completing a short survey on trends in digital
> morphology data generation and use as part of a perspectives piece on the
&g
Dear Morphmet Community,
I kindly ask your help in completing a short survey on trends in digital
morphology data generation and use as part of a perspectives piece on the
“Ethics of data sharing in the age of digital imaging”, which I will present at
this year’s BioSyst EU meeting
ided would be appreciated greatly!
Jon
Jon Stone
Department of Biology
McMaster University
jsto...@mcmaster.ca
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To unsubsc
ing use of morphoJ for geometric morphometrics. I have generated
> PCA plots for my data. However, when i try to generate CVA plots, i get
> this warning; kindly assist.
>
>
>
>
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> Y
I am learning use of morphoJ for geometric morphometrics. I have generated
PCA plots for my data. However, when i try to generate CVA plots, i get
this warning; kindly assist.
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You received this message
.com]
Sent: Friday, July 14, 2017 7:51 AM
To: Antonio Profico <antonio.prof...@uniroma1.it>
Cc: MORPHMET <morphmet@morphometrics.org>; morphmet_modera...@morphometrics.org
Subject: Re: [MORPHMET] Question on Morpho
Dear Antonio
Excuse my delayed response. Thank you, your suggestion w
3.69e+08 -3.71e+08 5.99e+08
>> 43 3.67e+08 -3.77e+08 5.94e+08
>>
>> , , 1880
>>
>> X YZ
>> 1 3.49e+08 -1.07e+08 6.05e+08
>> 2 3.17e+08 -2.81e+07 6.07e+08
>> 3 3.00e+08 -6.88e+07 6.51e+08
>> 4 3.22e+08
e+08 -2.81e+07 6.07e+08
>> 3 3.00e+08 -6.88e+07 6.51e+08
>> 4 3.22e+08 -1.39e+08 6.27e+08
>> 5 3.30e+08 -1.36e+08 6.23e+08
>> 6 3.37e+08 -1.34e+08 6.20e+08
>> 7 3.42e+08 -1.32e+08 6.17e+08
>> 8 3.47e+08 -1.30e+08 6.15e+08
>> 9 3.50e+08 -1.27e+08 6.14
4e+08 -4.97e+07 5.98e+08
> 22 3.38e+08 -4.26e+07 5.98e+08
> 23 3.30e+08 -3.65e+07 5.97e+08
> 24 3.11e+08 -2.72e+07 6.21e+08
> 25 3.09e+08 -3.05e+07 6.27e+08
> 26 3.09e+08 -3.28e+07 6.33e+08
> 27 3.09e+08 -3.43e+07 6.39e+08
> 28 3.09e+08 -3.73e+07 6.44e+08
> 29 3.07
-9.48e+07 6.62e+08
39 3.09e+08 -1.00e+08 6.62e+08
40 3.10e+08 -1.07e+08 6.60e+08
41 3.08e+08 -1.13e+08 6.56e+08
42 3.06e+08 -1.20e+08 6.48e+08
43 3.05e+08 -1.28e+08 6.43e+08
$NAs
NULL
$NA.list
NULL
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You re
es.google.com/site/alcardini/home/main
>
> FREE Yellow BOOK on Geometric Morphometrics:
> http://www.italian-journal-of-mammalogy.it/public/journals/3
> /issue_241_complete_100.pdf
>
> ESTIMATE YOUR GLOBAL FOOTPRINT: http://www.footprintnetwork.or
> g/en/index.php/GFN/page/c
/alcardini/home/main
FREE Yellow BOOK on Geometric Morphometrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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the
same issue? how I can solve this?. Interestingly, when I imported the
raw coordinates in MorphoJ derived from Amira in Morphologika format
occurs the same thing.
any thought or advice is wellcome
thanks so much
Pablo
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;>
>>> Hello All,
>>>
>>> I am using TPSRelW to slide semilandmarks. Once I have the consensus, I
>>> use Save aligned to export the aligned coordinates (including slid
>>> semilandmarks) as a tps file, that I want to import into MorphoJ.
>>>
>>
Good morning all, I have a problem in generating outline file for morphoj,
actually i want to study portunus. sp (blue swimming crab), and I want to
add outline to morphoj, I need an practical procedures for generating
outline file for morphoj.
Best regards.
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planning to work on this please be in touch.
All the best
Carlo
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ithout that information, so I have to type it one by one on
the tps file. Does anyone know how to export that tps file from
TPSRelW without losing the ID?
Thanks!
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s file. Does anyone know how to export that tps file from
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Thanks!
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http://www.morphometrics.org
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. And MorphoJ doesn't import it
without that information, so I have to type it one by one on the tps
file. Does anyone know how to export that tps file from TPSRelW without
losing the ID?
Thanks!
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You received
s exported has the IDs of the
specimens empty, with no information. And MorphoJ doesn't import it
without that information, so I have to type it one by one on the tps
file. Does anyone know how to export that tps file from TPSRelW
without losing the ID?
Thanks!
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empty, with no information. And MorphoJ doesn't import it without that
information, so I have to type it one by one on the tps file. Does anyone
know how to export that tps file from TPSRelW without losing the ID?
Thanks!
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
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of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
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is information between your colleagues if you
consider it appropriate.
Best regards
Sole
Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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Samantha Price, Ph.D.
Dept. Evolution & Ecology
UC Davis
Davis, CA 95616
USA
Website: www.evovert.com
Starting Fall 2017:
Dept. Biological Sciences
Clemson University
South Carolina 29634, USA
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;> For these reasons, I do not see any disadvantage of measuring a large
>> number of landmarks, except for a waste of time perhaps. If life time is an
>> issue, one can optimize landmark schemes as suggested by Jim or Aki.
>>
>> Best,
>>
>> Philipp
>>
the rest have very low values (because of the units).
Also, I take this opportunity to ask something I am not sure of: do the
variables within one block have to be independent from each other?
Thanks very much!
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therefore it must be 2*l 3*l Best wishes
> Ilker ERCAN
>
>
> Gönderen: Norman MacLeod <n.macl...@nhm.ac.uk <mailto:n.macl...@nhm.ac.uk>>
> Gönderildi: 3 Haziran 2017 Cumartesi 11:18
> Kime: MORPHMET
> Konu: Re: [MORPHMET] Re: number of landmarks and sample
nion, the challenge with these "big data"
>> is not statistical power in testing a signal, but finding the signal - the
>> low-dimensional subspace of interest - in the fist place. But this applies
>> to 50 or 100 variables as well, not only to thousands or millions. If no
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