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> For more options, visit https://groups.google.com/d/optout
> <https://groups.google.com/d/optout>.
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= “Stable”)
Warm regards!
Mike, and the geomorph team
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utònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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: alcard...@gmail.com, andrea.card...@unimore.it
WEBPAGE: https://sites.google.com/site/alcardini/home/main
FREE Yellow BOOK on Geometric Morphometrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
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at the time.
>
> Can anyone help?
>
> Cheers
> Bill
> --
> Bill Sellers, Tel: 01612751719, Mobile: 07857655786,
> http://www.animalsimulation.org
> University of Manchester, D1239 Michael Smith Building, Manchester, M13
> 9PT.
>
> --
> MORPHMET may be accesse
Sellers, Tel: 01612751719, Mobile: 07857655786,
> http://www.animalsimulation.org
> University of Manchester, D1239 Michael Smith Building, Manchester, M13
> 9PT.
>
> --
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r, M13 9PT.
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Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
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nd 3 could not locate the landmark locations of user1.
> > Or
> > 4. The landmarks selected are unreliable.
> >
> > Ideally I would need few other people relandmark the entire set, but it
> is
> > not possible to do it now. Can anyone help shed some light on wha
Hello all,
I have funding for a PhD student to undertake a project which, given my own
background, would likely involve a lot of morphometrics work. Please see ad at
the following link: https://t.co/w3NSGAC6sw
Jen
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rk the entire set, but it is
> not possible to do it now. Can anyone help shed some light on what is the
> probable cause? Thank you.
>
>
> Kind regards,
>
> Helmi Hadi, PhD
> School of Health Sciences, Universiti Sains Malaysia,
> 16150 Kubang Kerian, Kelantan, MALAYSIA
>
&
llazos [mailto:edgaresteba...@gmail.com]
Sent: Sunday, October 9, 2016 8:46 AM
To: morphmet@morphometrics.org
Subject: [MORPHMET] Question about size adjusted residuals in Geomorph
Hi everyone, I'm working in Geomorph package in R and I have a question
regarding working with allometric effect.
nces, Universiti Sains Malaysia,
16150 Kubang Kerian, Kelantan, MALAYSIA
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relandmark the entire set, but it is
not possible to do it now. Can anyone help shed some light on what is the
probable cause? Thank you.
Kind regards,
Helmi Hadi, PhD
School of Health Sciences, Universiti Sains Malaysia,
16150 Kubang Kerian, Kelantan, MALAYSIA
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lai tr. P (param.)
Individual 0.053860100.897668 600 123.74 <.0001
Error 10.000464280.007254 640 13.93 <.0001
Residual 0.66640.000521 1280
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like them to be.
-F. James RohlfDepts. of Ecology & Evolution and of
Anthropology Stony Brook University
Original message From: Serita Savolainen
<serita.savolai...@gmail.com> Date: 10/6/16 8:01 AM (GMT-05:00) To: MORPHMET
<morphmet@morp
the initial outline
does run around the whole bone, but the red line with the points does not.
Anybody know why this might be happening and how I could fix it?
Thank you very much!
Kind regards,
Serita Savolainen
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d Research
International is in the SCI-exp index.Dr Ilker ERCAN Lead Guest
Editorhttps://www.hindawi.com/journals/bmri/si/651051/cfp/
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by Geometric Morphometrics and
Parallel Transport. *Scientific Report*. Article number: 34906. doi:
10.1038/srep34906
All the best
paolo
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, Slovenija
T: (00 386) 041 808 366
E: tina.klenov...@um.si<mailto:tina.klenov...@um.si>,
www.fnm.um.si<http://www.fnm.uni-mb.si/>
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Paolo
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to mor
s? Another freeware software?
>>>>
>>>> - Is there any landmark acquisition software that loads .obj files with
>>>> textures? So far, I have not been able to do it in Landmark Editor, Evan
>>>> toolbox, Avizo, Morpho nor Geomorph.
>>>>
>>
/10915/55101
Best regards,
The authors
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University of Wisconsin-La Crosse
La Crosse, WI 54601 USA
Office Phone: +1-608-785-8476
From: Alannah Pearson <pearson.alan...@gmail.com>
Sent: Thursday, September 8, 2016 1:05:04 AM
To: MORPHMET
Subject: [MORPHMET] Re: Terminology: Morphometry or Morphom
of 3D models in this blue color (Question 2)?
Best regards,
Patrick
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as
>> Facultad de Odontología Universidad de Chile
>>
>> Dirección: Sergio Livingstone Pohlhammer 943
>> *(address)* Independencia, Región Metropolitana
>> Chile
>> Email:mtoroi...@odontologia.uchile.cl
>> Web: www.researchgate.net/prof
in R.
>
> For a newly digitized dataset the plot of the aligned landmarks of all
> specimens is horizontally inverted
>
> This is not the case for an older dataset also digitized using TPSDig.
>
> This must be a common issue but am unable to resolve. Any suggestions
in Britain (plus perhaps the
>> Commonwealth), whereas folks in North America seems to use "morphometrics"
>> pretty much all the time.
>> Furthermore, "morphometry" may come more naturally to writers who
>> translate from another language (French "
gt; translate from another language (French "morphométrie", German
> "Morphometrie" etc.).
>
> There would be room for linguistic research here
>
> Best wishes,
> Chris
>
>
> On 08/09/2016 06:01, Emma Sherratt wrote:
>
>> Dear Morphmet-hi
Possibly interesting to morphmet members. Forwarded via subscriber. -ds
Forwarded Message
Subject: [dzg-evol] Course: Barcelona, Spain; Phylogenetic analysis
using R, 6-10 March 2017
Date: Thu, 1 Sep 2016 11:39:29 +0200
From: dzg evol <dzg.e...@gmail.com>
To:
digitized using TPSDig.
This must be a common issue but am unable to resolve. Any suggestions?
Thanks in advance,
CDM
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.
Alannah
On Thursday, September 8, 2016 at 3:01:03 PM UTC+10, Emma Sherratt wrote:
> Dear Morphmet-hive mind,
>
>
> I've been curious for some time about the terms "morphometry" and
> "morphometrics" and whether they are in fact interchangeable or qui
)* Independencia, Región Metropolitana
> Chile
> Email:mtoroi...@odontologia.uchile.cl
> Web: www.researchgate.net/profile/Viviana_Toro_Ibacache/
> www.cienciaymemoria.cl/staff.html
>
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metrics" pretty much all the time.
Furthermore, "morphometry" may come more naturally to writers who
translate from another language (French "morphométrie", German
"Morphometrie" etc.).
There would be room for linguistic research here
Best wishes,
Chris
On 08/
wpoint, "morphometrics" sounds better to
> me.
>
> So this humble worker said... :-)
>
> Salud!
>
> --
> Dr. Mauro J. Cavalcanti
> E-mail: mauro...@gmail.com
> Web: http://sites.google.com/site/maurobio
>
>
> Em 08/09/2016 02:01, "Emma She
Dear Morphmet-hive mind,
I've been curious for some time about the terms "morphometry" and
"morphometrics" and whether they are in fact interchangeable or quite
distinct. Also, is it related to the difference between phylogeny and
phylogenetics?
Regards,
Emma
--
MORP
;
>>> Any help is greatly appreciated.
>>>
>>> Best (y saludos),
>>> Viviana
>>>
>>>
>>>
>>> --
>>>
>>> *Viviana Toro-Ibacache DDS MSc PhD*
>>> Profesora Asistente *(Assistant Professor)*
>>> Ce
natomía, Instituto de Investigación en Ciencias Odontológicas
>> Facultad de Odontología Universidad de Chile
>>
>> Dirección: Sergio Livingstone Pohlhammer 943
>> *(address)* Independencia, Región Metropolitana
>> Chile
>> Email:mtoroib
stant Professor)*
>> Centro de Análisis Cuantitativo en Antropología Dental (CA2)
>> Unidad de Anatomía, Instituto de Investigación en Ciencias Odontológicas
>> Facultad de Odontología Universidad de Chile
>>
>> Dirección: Sergio Livingstone Pohlhammer 943
>> *(address)*
tología Universidad de Chile
>
> Dirección: Sergio Livingstone Pohlhammer 943
> *(address)* Independencia, Región Metropolitana
> Chile
> Email:mtoroibaca...@odontologia.uchile.cl
> Web: www.researchgate.net/profile/Viviana_Toro_Ibacache/
>
, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Christy Hipsley [mailto:chips...@museum.vic.gov.au]
Sent: Tuesday, September 6, 2016 2:00 AM
To: MORPHMET <
t of Statistics
>
> Iowa State University
>
> www.public.iastate.edu/~dcadams/
>
> phone: 515-294-3834
>
>
>
> *From:* Damien Esquerre Gheur [mailto:damien@anu.edu.au ]
>
> *Sent:* Thursday, June 30, 2016 6:50 AM
> *To:* morp...@morphometrics.org
> *Subject:* [
niversitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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dontologia.uchile.cl
> Web: www.researchgate.net/profile/Viviana_Toro_Ibacache/
> www.cienciaymemoria.cl/staff.html
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
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>> Email: mtoroibaca...@odontologia.uchile.cl > mtoroibaca...@odontologia.uchile.cl>
>> Web: www.researchgate.net/profile/Viviana_Toro_Ibacache/ <
>> http://www.researchgate.net/profile/Viviana_Toro_Ibacache/>
>> www.cienciaymemor
te.net/profile/Viviana_Toro_Ibacache/
<http://www.researchgate.net/profile/Viviana_Toro_Ibacache/>
www.cienciaymemoria.cl/staff.html
<http://www.cienciaymemoria.cl/staff.html>
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E Yellow BOOK on Geometric Morphometrics: http://www.italian-journal-of-
mammalogy.it/public/journals/3
/issue_241_complete_100.pdf
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Metropolitana
Chile
Email:mtoroibaca...@odontologia.uchile.cl
Web: www.researchgate.net/profile/Viviana_Toro_Ibacache/
www.cienciaymemoria.cl/staff.html
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tatisticaltables-
> fourthedition-rohlf
> Please consider the environment before printing this email
>
> -Original Message-
> From: Guillermo Navalón [mailto:guiyelm...@gmail.com]
> Sent: Monday, August 22, 2016 9:34 AM
> To: MORPHMET <morphmet@morphometrics.org>
> Subjec
trics:
> http://www.italian-journal-of-mammalogy.it/public/journals/3
> /issue_241_complete_100.pdf
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> --- You received this message because you are subscribed to the Google
> Groups "MORPHMET" gr
Dear all,
I am advertising a 2-year post-doctorial fellowship focused on artefact
morphometrics (lithics). Those interested, please have a look here
http://www.au.dk/om/stillinger/videnskabelige-stillinger/stillinger/Vacancy/show/852090/5285/;
feel free to share.
Yours,
Felix
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I would like to freshen up the online resource links on the
www.morphometrics.org page. If you have any relevant active links, please
post them so I can add them to the website (if I can remember how).
Thanks, the MORPHMET Management
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:guiyelm...@gmail.com]
Sent: Monday, August 22, 2016 9:34 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Problems with min-dsquare sliding in tpsRelw
Hi everyone,
In a very disparate sample of bird skulls I am using a configuration with both
lnmdks and smlndmks. Specifical
ad decimal character in
coordinates?.'
I get the same error for tps files with and without removed control lines.
I hope someone has an idea why this Problem shows up and can help me.
Thanks
Jan
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have tried to change the slide maximum iterations and slide recursive options
but still recover the same effect.
Any idea what is going on here? Is it a bug of the program or is it a proper
statistical effect?
Thank you!
Guillermo Navalón
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://sites.google.com/site/alcardini/home/main
FREE Yellow BOOK on Geometric Morphometrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
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.edu]
Sent: Tuesday, August 23, 2016 4:59 PM
To: 'Morphmet (morphmet@morphometrics.org)' <morphmet@morphometrics.org>
Subject: tpsDig2 version 2.28 available
I have just uploaded version 2.28 of tpsDig2 to the
http://life.bio.sunysb.edu/morph site.
The new version again does a proper sc
m/Catalog/product/statisticaltables-fourthedition-ro
hlf>
http://www.whfreeman.com/Catalog/product/statisticaltables-fourthedition-roh
lf
P Please consider the environment before printing this email
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es P values, I would carefully check how different R2 of the models
you're comparing are and would also carefully inspect the visualizations
(do they suggest similar patterns across groups?).
Good luck.
Cheers
Andrea
On 19/08/16 02:34, Christy Hipsley wrote:
Dear Morphmet community,
I'm wor
undetected DA in symmetrical matrix?
If it does not, the samples with pure FA contain what?
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of hire. Expertise in geometric morphometrics, genetics, or
orthodontics is advantageous.
Please submit applications including CV, list of publications, and a
statement of research interests to Philipp Mitteroecker
(philipp.mitteroec...@univie.ac.at) until Sept. 5.
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e greatly appreciated.
Thank you,
Jade Racine
Master’s student
Department of Anthropology
University of Montreal, Canada
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the article for review shortly; as
the network changes, I will post an update with a link to the most current
iteration of the citation network.
A big tip of the hat to the MORPHMET community for helping us out by
proposing additions-you'll find that all of your suggestions have been
incorporated
trick Arnold, M.Sc.
>
> wissenschaftlicher Mitarbeiter und Doktorand
> Institut für Spezielle Zoologie und Evolutionsbiologie
> mit Phyletischem Museum
> Friedrich-Schiller-Universität Jena
> Erbertstraße 1
> 07743 Jena
> Germany
>
> Phone: +49 (0)3641 9-49165
> Fax:
.
wissenschaftlicher Mitarbeiter und Doktorand
Institut für Spezielle Zoologie und Evolutionsbiologie
mit Phyletischem Museum
Friedrich-Schiller-Universität Jena
Erbertstraße 1
07743 Jena
Germany
Phone: +49 (0)3641 9-49165
Fax:+49 (0)3641 9-49142
E-mail: patrick.arn...@uni-jena.de
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to a background
check.
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to morphme
see the results of Mahalanobis distances and
p-values between my groups?
In general is this better to use CVA or Discriminant Analysis to classify
objects with a prior assumption?
I would appreciate any help.
Jenny
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-
d C++ code
Best
Stefan
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of Health Sciences,
Universiti Sains Malaysia,
Kelantan, Malaysia
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of mirror image when landmarking
the object. Does it matter or will it affect analysis later on say if I am
classifying it based on side (if I add a left/right side classifier)?
Thank you.
Helmi Hadi,
School of Health Sciences,
Universiti Sains Malaysia,
Kelantan, Malaysia
--
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> superimposition (with sliding) for semi-landmarks to deal with data like
> this? Or is there any other method that will not be affected by the
> 'Pinocchio' effect (as much)? Literature or experience on similar issue?
>
> Thanks,
> Wong Jin Yung
>
> --
> MORPHM
like
this? Or is there any other method that will not be affected by the
'Pinocchio' effect (as much)? Literature or experience on similar issue?
Thanks,
Wong Jin Yung
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of Plastic Surgery
Division of Biostatistics and Epidemiology
Cincinnati Children's Hospital Medical Center
Burnett Ave. ML 2020
Cincinnati, OH 45229
phone: 513-803-0383
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,
Dean and the Geomorph Team
Dr. Dean C. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
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matic in the current release of the program, but future version will
> allow more manual intervention to address this issue.
>
> As both forAge and GPSA implement new methods, you encouraged to give
> these programs a try using the provided data sets, test them extensively
> automatic in the current release of the program, but future version will
> allow more manual intervention to address this issue.
>
> As both forAge and GPSA implement new methods, you encouraged to give
> these programs a try using the provided data sets, test them extensively on
t know how should I proceed to load surface files into
> Landmark Editor.
>
>
> The above steps were performed following the user manual of Landmark
> Editor available from
> http://www.idav.ucdavis.edu/research/projects/EvoMorph/supplement/LandmarkDoc_v3_b6.pdf
>
>
&
or available from
> http://www.idav.ucdavis.edu/research/projects/EvoMorph/supplement/LandmarkDoc_v3_b6.pdf
>
>
> Thank you very much if you could try opening the attached sample.stl file
> on your Lanmark Editor to help me figure out where I was wrong or if any
> other files are nee
hfreeman.com/Catalog/product/statisticaltables-fourthedition-roh
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shape variation (for example between
geographic areas). In this case is this better to put landmarks in
both sides of the midline or considering just one side is enough? If I
want to do the symmetrizing how can I do it with tps series or Morphoj?
Any help would be appreciated!
Eli
--
MORPHMET may
variation (for example between geographic areas).
In this case is this better to put landmarks in both sides of the midline
or considering just one side is enough? If I want to do the symmetrizing
how can I do it with tps series or Morphoj?
Any help would be appreciated!
Eli
--
MORPHMET may
relative dates of morphological divergence. I am interested in a
microevolutionary context.
Thanks in advance for any suggestion
Warm regards
Pablo
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and Department of Biology,
University of Washington, Box 355065, Seattle, WA 98195-5065 USA
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;
> You could obtain a Generalized Procrustes superposition of your forms,
> without resizing the specimens, then feed the resulting coordinates for
> each species into one of the phylogenetic comparative methods packages.
>
> Joe
>
> Joe Felsenstein j...@gs.washington.
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Damien Esquerre Gheur [mailto:damien.esque...@anu.edu.au]
Sent: Thursday, June 30, 2016 6:50 AM
To: morphmet@morphometrics.org
Subject: [MO
resulting coordinates for
each species into one of the phylogenetic comparative methods packages.
Joe
Joe Felsenstein j...@gs.washington.edu
Department of Genome Sciences and Department of Biology,
University of Washington, Box 355065, Seattle, WA 98195-5065 USA
--
to incorporate
phylogeny in slope comparison models?
Any help would be greatly appreciated
Damien Esquerré
PhD Student, Keogh Lab
Division of Evolution, Ecology and Genetics, Research School of Biology
The Australian National University
44 Daley Road, ACTON ACT 2601, Australia
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quired specimens should not
> be so different from the data I already had. Is there anything I am doing
> wrong? To my understanding, the images being taken by different sources
> should not matter because gpagen function transforms all the landmarks
> orientations to represent o
the data I already had. Is there anything I am doing wrong?
To my understanding, the images being taken by different sources should not
matter because gpagen function transforms all the landmarks orientations to
represent only shape data.
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different from the data I already had. Is there anything I am doing
wrong? To my understanding, the images being taken by different sources
should not matter because gpagen function transforms all the landmarks
orientations to represent only shape data.
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a dataframe in R
- This might be a very basic function, but I am unable to figure this out.
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gia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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You
18 2.28
0.0016 0.18 0.0288
Ind * Side0.030914240.105366 2934
Many thanks in advance and best wishes,
Natalia
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