, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
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;
> F. James Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
>
> Research Professor, Anthropology
>
> Stony Brook University
>
>
>
> *From:* Miguel Eduardo Delgado Burbano [mailto:mdelgadoburb...@gmail.com]
> *Sent:* Sunday, January 31, 2016 3:35 AM
>
able results.
>
>
>
>
>
> F. James Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
>
> Research Professor, Anthropology
>
> Stony Brook University
>
>
>
> *From:* Elahep [mailto:ellie.parv...@gm
tion
Research Professor, Anthropology
Stony Brook University
From: Elahep [mailto:ellie.parv...@gmail.com]
Sent: Saturday, January 30, 2016 7:14 AM
To: MORPHMET <morphmet@morphometrics.org>
Cc: ellie.parv...@gmail.com; jkunk...@une.edu
Subject: Re: [MORPHMET] Mahalanobis distance in cluste
gt;
> > As far as I know Mahalanobis distance is the standardized form of
> Euclidean distance which standardized data with adjustments made for
> correlation between variables and weights all variables equally.
> >
> > Why this distance measure is frequently used in GM clus
and weights all variables equally.
>
> Why this distance measure is frequently used in GM cluster analysis??
>
>
>
> Thanks in advance
>
> Elahe
>
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You receiv
is the standardized form of Euclidean
distance which standardized data with adjustments made for correlation
between variables and weights all variables equally.
Why this distance measure is frequently used in GM cluster analysis??
Thanks in advance
Elahe
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(843) 349-2254
https://scholar.google.com/citations?user=hVEidC8J=en
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dad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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ent.
>
>
> Thanks for any help!
>
> Christy
>
> School of BioSciences
> University of Melbourne
> Parkville VIC 3010, Australia
> Email: chips...@unimelb.edu.au
>
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ignificant phylogenetic signal and I suspect that one
> ecological group in particular is highly convergent.
>
>
> Thanks for any help!
>
> Christy
>
> School of BioSciences
> University of Melbourne
> Parkville VIC 3010, Australia
> Email: chips...@unimelb.edu.au
>
>
phylogenetic signal and I suspect that one
ecological group in particular is highly convergent.
Thanks for any help!
Christy
School of BioSciences
University of Melbourne
Parkville VIC 3010, Australia
Email: chips...@unimelb.edu.au
--
MORPHMET may be accessed via its webpage at http
particular is highly convergent.
>
>
> Thanks for any help!
>
> Christy
>
> School of BioSciences
> University of Melbourne
> Parkville VIC 3010, Australia
> Email: chips...@unimelb.edu.au
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
&
m
Dr. Dean C. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
--
MORPHMET may be accessed via its webpage at ht
working nicely.
>
> I'll appreciate very much if someone can give me a hand here.
> But, I will also appreciate information of how to make nice 3D shape
> changes images with other software!
>
> Thanks,
>
> Luisa Pallares
>
> Department of Evolutionary Genetics
ware!
>
> Thanks,
>
> Luisa Pallares
>
> Department of Evolutionary Genetics
> Max Planck Institute for Evolutionary Biology
> August-Thienemannstr. 2
> 24306 Plön, Germany
> Tel:04522 763 386pall...@evolbio.mpg.de
>
>
>
--
MORPHMET may be accessed via its web
appreciate information of how to make nice 3D shape
changes images with other software!
Thanks,
Luisa Pallares
Department of Evolutionary Genetics
Max Planck Institute for Evolutionary Biology
August-Thienemannstr. 2
24306 Plön, Germany
Tel:04522 763 386
palla...@evolbio.mpg.de
--
MO
ice 3D shape
> changes images with other software!
>
> Thanks,
>
> Luisa Pallares
>
> Department of Evolutionary Genetics
> Max Planck Institute for Evolutionary Biology
> August-Thienemannstr. 2
> 24306 Plön, Germany
> Tel:04522 763 386pall...@evolbio.mpg.de
>
>
te for Evolutionary Biology
> August-Thienemannstr. 2
> 24306 Plön, Germany
> Tel:04522 763 386
> palla...@evolbio.mpg.de
>
> --
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> ---
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sure that's not how it's done) Is there a simple way of doing this?
Best,
Ari
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54 221 4257527
https://unlp.academia.edu/DelgadoMiguel
http://www.cearqueologia.com.ar/
E-mail: medelg...@fcnym.unlp.edu.ar
-
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elements I need to create a .nts file.
I've searched about online and the only things I could find were how to
read a .nts file and the "digitize" functions. I know it's possible to
simply write .nts files, because I have done it before ... but I've
forgotten what I did.
Help?
Best,
Ari
--
now for each of my elements I need to create a .nts
> file. I've searched about online and the only things I could find were how
> to read a .nts file and the "digitize" functions. I know it's possible to
> simply write .nts files, because I have done it before ... but I've
>
:10 PM
To: morphmet@morphometrics.org; morphmet_modera...@morphometrics.org
Subject: [MORPHMET] 3D surface scanner information
Hello everyone
I am interested to obtain a 3D surface scanner which will be used to study
hominin teeth and skulls. Does anyone have any experience, suggestions
pALLPC, scale=TRUE) <- PC1 100%
require(vegan)
screeplot(lpALLPC, npcs=15, type="lines", bstick=TRUE)
plot(lpALLPC$x[ ,1:2], asp=1, pch=21, cex=2.5, bg="black") <- subscript [ 1:2]
out of bounds
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t;- PC1 100%
require(vegan)
screeplot(lpALLPC, npcs=15, type="lines", bstick=TRUE)
plot(lpALLPC$x[ ,1:2], asp=1, pch=21, cex=2.5, bg="black") <- subscript [
1:2] out of bounds
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R forum, but I am hoping someone here has
reliable code for reading Avizo landmarks into R.
Thanks in advance.
David
--
David Katz
University of California, Davis
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,0,1 (or maybe
1,0,0).
This is really strange behavior. A read function shouldn't write.
My issue may be better suited to an R forum, but I am hoping someone here
has reliable code for reading Avizo landmarks into R.
Thanks in advance.
David
--
David Katz
University of California, Davi
element is "@2." Thereafter, the
> landmark file adds as many three-coordinate triplets as there are landmarks
> in the original data file. The values of these triplets are 0,0,1 (or maybe
> 1,0,0).
>
> This is really strange behavior. A read function shouldn't write.
wrote:
>
>> Hi all,
>>
>> I'm hoping this will be a quick and easy question. I've even done it
>> before and then forgotten how.
>>
>> I need to create quite a few .nts files. The easiest way to do this I
>> think is in R. I read in my .dta file, got my
ghly
discriminates myocardial infarction. In: Camara O., et. al. (Eds), STACOM
2015, Lecture Notes in Computer Science, vol. 9534, Springer International,
pp. 119-129.
PDF available on request
Best
paolo
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Hi,
This subject pops up every few months on Morphmet. The general consensus is
that either Creaform or structured light scanners like Artec or LMI have
made are generally very satisfactory solutions. People like Breuckmann are
an order of magnitude more expensive but also very good.
You'll want
/DelgadoMiguel
http://www.cearqueologia.com.ar/
E-mail: medelg...@fcnym.unlp.edu.ar
-
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ic
Eric Delson
Professor of Anthropology, City University of New York
American Museum of Natural History and New York Consortium in
Evolutionary Primatology (NYCEP)
eric.del...@lehman.cuny.edu
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Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
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--
the
semilandmarks along a curvature for instance the middle line of the cranial
vault from a lateral view or the complete vault in the same view. So if any
may share his/her own method I would be very gratefull. Thanks in advance
best
Miguel
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). Spain
www.icp.cat
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oduct/biometry-fourthedition-sokal
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hlf>
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s, because the program doesn't
support background curves. As you mentioned I'll use the aligned
coordinates of landmarks and semilandmarks as dependant variables.
My data doesn't have asymmetry since I put landmarks on only left side of
the specimens.
Thanks a lot for your help. It was great.
Elahe
etric and, if so, if
asymmetry is of interest for you...
Best,
Carmelo
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landmarks and semi-landmarks
(= *Procrustes coordinates*)
Would you please help me with this question?
Thanks a lot
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gards,
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E-mail: mauro...@gmail.com
Web: http://sites.google.com/site/maurobio
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regards,
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E-mail: mauro...@gmail.com
Web: http://sites.google.com/site/maurobio
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n. Maybe it is better to get whichever
> is cheaper.
>
>
> Kind regards,
> Helmi
>
> School of Health Sciences, Universiti Sains Malaysia,
> 16150 Kubang Kerian, Kelantan, MALAYSIA
> Tel: +609 7677834; Fax:+609 7677515
>
>
>
>
> -Original Message-
.@unimol.it <mailto:a@unimol.it>
>> e-mail: anna.lo...@gmail.com <mailto:anna.lo...@gmail.com>
>> Tel: +39 0874404140
>> Fax: +39 087440123
>> skype:anna.loy56
>> http://scholar.google.com/citations?hl=it=_dVgP6YJ
>> Project 'It is never too Darw
It is never too Darwin':
Project therio.it <http://therio.it> : https://dibt.unimol.it/therio/
Assistan Editor Italian Journal of Zoology
http://www.tandfonline.com/toc/tizo20/current#.Uuv5YfjANf9
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to m
ite versatile if a little daunting. I
hope this wasn't too basic ... let me know how you get on.
Best,
Ari
On Mon, Dec 14, 2015 at 5:18 AM, Jay Devine
<<mailto:jaypatrickdev...@gmail.com>jaypatrickdev...@gmail.com> wrote:
Hello again, Morphmet!
I received an immense amount of help with my
last quest
also allows you to "Explore
>> Space" which is really helpful. Make sure that button in the Control Panel
>> is toggled and then click on any spot in the PC chart. You'll note that the
>> landmarks in the viewer change to correspond with the position in the PC
>> chart you've
Avizo?
Thank you very much for your time.
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and resolution. Maybe it is better to get whichever is
cheaper.
Kind regards,
Helmi
School of Health Sciences, Universiti Sains Malaysia,
16150 Kubang Kerian, Kelantan, MALAYSIA
Tel: +609 7677834; Fax:+609 7677515
-Original Message-
From: morphmet [mailto:dsl...@morphometrics.org]
Sent
iven what you're trying to do though, I think you
might want to try geomorph in R. It's really quite versatile if a little
daunting. I hope this wasn't too basic ... let me know how you get on.
Best,
Ari
On Mon, Dec 14, 2015 at 5:18 AM, Jay Devine <jaypatrickdev...@gmail.com>
wrote:
>
Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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Jay, as far as I know, you can't do that with
MorphoJ but you can do it with Morphologika and
the old Morpheus (not sure about the new one, but
Dennis will tell you if it's possible).
Cheers
Andrea
At 06:18 14/12/2015, Jay Devine wrote:
Hello again, Morphmet!
I received an immense amount
Hello again, Morphmet!
I received an immense amount of help with my last question, so I figured I
would try again! My silly question this time concerns 3D visualization of
shape change.
I've been able to successfully create wireframe graphs for my data, but for
some reason I can not create
kal
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-Original Message-
From: Kandace Hugentobler [mailto:kandace.hugentob...@gmail.com]
Sent: Friday, December 11, 2015 8:34 PM
To: MORPHMET &
restarting the computer and
redownloading tps relw. Do you have any suggestions?
Thanks,
Kandace
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datasets of mouse mandibles. Frontiers in Zoology 12:33.
M
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e: 515-294-3834
From: Adams, Dean [EEOBS]
Sent: Wednesday, December 2, 2015 9:11 AM
To: morphmet@morphometrics.org
Subject: R code for CR modularity test
Colleagues,
I have received a number of requests for the R code for implementing the CR
coefficient for evaluating modularity. To accom
. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
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update of
geomorph.
Best to all,
Dean
Dr. Dean C. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
--
MORPHM
looks a bit strange on there, but if you copy and paste
the values into notepad it looks fine.
Thank you so much, in advance, for your time and help.
Jay
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Hi, M-
Would you be able to send me a copy of the file format you used as well? I'm
encountering a similar issue, too.
Jay
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).
Here is a link to the data I'm using if you guys have time to take a peek:
http://textuploader.com/5cbx8
The format looks a bit strange on there, but if you copy and paste the values
into notepad it looks fine.
Thank you so much, in advance, for your time and help.
Jay
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opriate.
With best regards
Sole
Soledad De Esteban-Trivigno, PhD
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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correct in assuming that I can use the residuals created by the
regression (the function is "plotAllometry" from the geomorph package and
the output is in Principal components)?
Tips and suggestions are more than welcome.
Yours faithfully
Abel Bosman
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ht how to tell the program to
use the first row of each specimen of the array as start point for each curve.
Is there any way to do this? It would be extremely time-saving for my analyses.
Thank you so much in advance. I really appreciate any advise!
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men of the array as start point for each
> curve. Is there any way to do this? It would be extremely time-saving for
> my analyses.
>
> Thank you so much in advance. I really appreciate any advise!
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
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tion-roh
lf
P Please consider the environment before printing this email
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. Adams
Professor
Department of Ecology, Evolution, and Organismal Biology
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
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with several datasets.
Has anyone examined this in detail?Â
Thanks-
-Bryan
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.
Has anyone examined this in detail?
Thanks-
-Bryan
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to find out
>> whether the mean head width of a certain diet is significantly broader than
>> another diet.
>> Therefore, my question to you is: Am I acutally allowed to divide these
>> PC-scores by total length?
>> Many thanks in advance!
>> Kind regards,
>&g
different diets, as this
> > would allow us to find out whether the mean head width of a certain
> > diet is significantly broader than another diet.
> > Therefore, my question to you is: Am I acutally allowed to divide
> > these PC-scores by total length?
> &g
Sitting in the Atlanta airport on my way back from the third Rohlf Medal
award ceremony, and I just approved the 750th subscriber to the list.
Congratulations to HS in Alaska who wins a free subscription to MORPHMET.
:)
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luster analysis by morphoJ, but ı can't manage to create
nexux file. How is it create
thanks all
--
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Dicle University, Science Faculty
Biology Departmant
21280 DİYARBAKIR/TURKEY
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dvance!
Kind regards,
Jens De Meyer
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Carmelo Fruciano
Honorary Fellow - University of C
another diet.
Therefore, my question to you is: Am I acutally allowed to divide these
PC-scores by total length?
Many thanks in advance!
Kind regards,
Jens De Meyer
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To unsubscribe from this group and stop receiving
to find out
> whether the mean head width of a certain diet is significantly broader than
> another diet.
> Therefore, my question to you is: Am I acutally allowed to divide these
> PC-scores by total length?
> Many thanks in advance!
> Kind regards,
> Jens De Meyer
>
,
Catherine
Catherine M. Hulshof, PhD
Assistant Professor
Department of Biology
University of Puerto Rico Mayaguez
http://catherinehulshof.wordpress.com/
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em and preferences. Under the
> command prompt in windows you can just type
> copy *.TPS all.TPS
> to append all the TPS files (in alphabetical order) in a single file
> called all.TPS.
> Other solutions (importing in R, combining and then exporting) might
> be
, as well).
Any suggestions? Or will I have to start over with a TPS file containing
all images from all the populations as one?
Kind regards,
Daniel.
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D field but it didn't give me any problem in
>> a quick check I did on another package of the tps series. How do you
>> do this depends on your operating system and preferences. Under the
>> command prompt in windows you can just type
>> copy *.TPS all.TPS
>> to append all the
start over with a TPS file
>>> containing
>>> > all images from all the populations as one?
>>>
>>> Hi Daniel,
>>> I guess you could simply try copying/pasting all the files together.
>>> This doesn't update the ID field but it didn't give me any p
file
called all.TPS.
Other solutions (importing in R, combining and then exporting) might
be more elegant, though...
Best,
Carmelo
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Carmelo Fruciano
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e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
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distribute this information between your colleagues if you
consider it appropriate.
Best wishes
Sole
Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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MO
m]
Sent: Tuesday, October 20, 2015 2:03 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Appending TPS files
Hi All,
So I am facing a dilemma, where I have digitized landmarks on 90 individuals,
for each of 11 populations. The images and the associated TPS file for ea
- PCA
- bgPCA or CVA (?)
- MANOVA
- LDA
- Hierarchical clustering (to see how it compares to the molecular trees)
- Phylogenetic comparison tests to estimate ancestral character states
Please advise, thank you
Brenna
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consider it appropriate.
With best regards
Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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ssue.
Best
paolo
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The arguments of the pt2dvar() function are :
array = an input array of n sh
://www.flywings.org.uk
Skype: chris_klingenberg
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aduates. Please pass them along as you see fit. Interested
> students could also contact me, but they may need to be repetitive and
> persistent as I probably average 40+ emails per day - I am sure many of you
> can relate.
>
> -Dennis E. Slice
>
> --
> Department of Scie
It's been about a year since I posted the above, and it is still a good
idea. -ds
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Hi morphometricians,
I harvested several leaves in 30 trees (the number of leaves per trees is
not same) and I want analyse with anova in morphoJ. can I interpret the
results directly or there would be a problem because number of leaves isn't
same?
Thankyou for help.
Zakia.
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