Re: [Numpy-discussion] load from text files Pull Request Review

2011-09-06 Thread Derek Homeier
On 02.09.2011, at 11:45PM, Christopher Jordan-Squire wrote: and unfortunately it's for 1D-arrays only). That's not bad for this use -- make a row a struct dtype, and you've got a 1-d array anyway -- you can optionally convert to a 2-d array after the fact. I don't know why I didn't

Re: [Numpy-discussion] load from text files Pull Request Review

2011-09-06 Thread Christopher Jordan-Squire
On Tue, Sep 6, 2011 at 9:32 AM, Derek Homeier de...@astro.physik.uni-goettingen.de wrote: On 02.09.2011, at 11:45PM, Christopher Jordan-Squire wrote: and unfortunately it's for 1D-arrays only). That's not bad for this use -- make a row a struct dtype, and you've got a 1-d array anyway -- you

Re: [Numpy-discussion] Efficient way to load a 1Gb file?

2011-09-06 Thread Derek Homeier
On 02.09.2011, at 1:47AM, Russell E. Owen wrote: I've made a pull request https://github.com/numpy/numpy/pull/144 implementing that option as a switch 'prescan'; could you review it in particular regarding the following: Is the option reasonably named and documented? In the case the

[Numpy-discussion] Smoothing binary volumes

2011-09-06 Thread Thiago Franco Moraes
Hi all, I've been implementing the algorithm from this paper Reducing Aliasing Artifacts in Iso-Surfaces of Binary Volumes from Ross T. Whitaker. Because I develop a opensource software which works with segmentation of CT and MRI medical images, and the results of segmentation is a binary volume

[Numpy-discussion] numpy blas running slow: how to check that it is properly linked

2011-09-06 Thread David Cottrell
I posted on stackoverflow but then noticed this message board: http://stackoverflow.com/questions/7311869/python-numpy-on-solaris-blas-slow-or-not-linked I'm reposting the full post below: Matrix-Matrix multiplies are very slow on my Solaris install (running on a sparc server) compared to my

Re: [Numpy-discussion] numpy blas running slow: how to check that it is properly linked

2011-09-06 Thread David Cournapeau
On Tue, Sep 6, 2011 at 2:38 PM, David Cottrell david.cottr...@gmail.com wrote: I posted on stackoverflow but then noticed this message board: http://stackoverflow.com/questions/7311869/python-numpy-on-solaris-blas-slow-or-not-linked I'm reposting the full post below: Matrix-Matrix

Re: [Numpy-discussion] numpy blas running slow: how to check that it is properly linked

2011-09-06 Thread David Cournapeau
On Tue, Sep 6, 2011 at 5:12 PM, David Cottrell david.cottr...@gmail.com wrote: Actually this link: http://www.scipy.org/PerformanceTips seems to indicate that numpy.dot does use blas ... This not true (you can check by looking into numpy/core/setup.py, which explicitly checks for ATLAS for