[Numpy-discussion] Not checking github

2013-06-15 Thread Sebastian Berg
Just to note, I disabled most github notifications for time reasons for the next months, so if something pops up that you think I should look at, use @mention. - Sebastian ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org

[Numpy-discussion] Reading data from structured text

2013-06-15 Thread klo uo
Hi, I have data reports in text files, where first 5 lines describe the data following, which is actually continuous time series of 2048 values wrapped in 205 rows and 10 columns, and each file has 12 such sets. If I crop to first dataset and leave the headers (first 5 lines),

[Numpy-discussion] saving 3d array

2013-06-15 Thread Sudheer Joseph
Dear Experts,     I was trying to save results of eof analysis to an npz file and see that it is not possible to save a 3d array as npz file variable. Is this true even today or are there developments which make this possible?  I am able to save all other variables except the 3d

Re: [Numpy-discussion] saving 3d array

2013-06-15 Thread Matthew Brett
Hi, On Sat, Jun 15, 2013 at 1:22 PM, Sudheer Joseph sudheer.jos...@yahoo.com wrote: Dear Experts, I was trying to save results of eof analysis to an npz file and see that it is not possible to save a 3d array as npz file variable. Is this true even today or are there

Re: [Numpy-discussion] Not checking github

2013-06-15 Thread Charles R Harris
On Sat, Jun 15, 2013 at 4:00 AM, Sebastian Berg sebast...@sipsolutions.netwrote: Just to note, I disabled most github notifications for time reasons for the next months, so if something pops up that you think I should look at, use @mention. OK. Thanks for the work you have done. We'll look

Re: [Numpy-discussion] saving 3d array

2013-06-15 Thread Sudheer Joseph
Thank you very much for this tip. Is there a typical way to save masked and the rest separately?. Not much familiar with array handling in numpy. Sudheer ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org

[Numpy-discussion] new OpenOpt Suite release 0.50

2013-06-15 Thread Dmitrey
Hi all, I'm glad to inform you about new OpenOpt Suite release 0.50 (2013-June-15): * interalg (solver with specifiable accuracy) now works many times (sometimes orders) faster on (possibly multidimensional) integration problems (IP) and on some optimization problems * Add modeling

Re: [Numpy-discussion] saving 3d array

2013-06-15 Thread Matthew Brett
Hi, On Sat, Jun 15, 2013 at 2:51 PM, Sudheer Joseph sudheer.jos...@yahoo.com wrote: Thank you very much for this tip. Is there a typical way to save masked and the rest separately?. Not much familiar with array handling in numpy. I don't use masked array myself, but it looks like it would

[Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Warren Weckesser
I'm getting a seg. fault in master when I run the tests. I'm on Ubuntu 12.04 64 bit, with Python 3.3.2 (64 bits): $ python3 -c import numpy as np; np.test('full') Running unit tests for numpy NumPy version 1.8.0.dev-fa5bc1c NumPy is installed in

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Warren Weckesser
On Sat, Jun 15, 2013 at 11:43 AM, Warren Weckesser warren.weckes...@gmail.com wrote: I'm getting a seg. fault in master when I run the tests. I'm on Ubuntu 12.04 64 bit, with Python 3.3.2 (64 bits): $ python3 -c import numpy as np; np.test('full') Running unit tests for numpy NumPy

Re: [Numpy-discussion] saving 3d array

2013-06-15 Thread Pierre GM
On Jun 15, 2013, at 17:35 , Matthew Brett matthew.br...@gmail.com wrote: Hi, On Sat, Jun 15, 2013 at 2:51 PM, Sudheer Joseph sudheer.jos...@yahoo.com wrote: Thank you very much for this tip. Is there a typical way to save masked and the rest separately?. Not much familiar with array

Re: [Numpy-discussion] saving 3d array

2013-06-15 Thread Sudheer Joseph
Thanks a lot,   Both suggestions helped me and I could save it as below. np.savez('eof_output',eof=eof1.data,pcs=pc1,lags=lags,lons=lons,lats=lats,x=x,y=y,clevs=clevs,eof_mask=eof1.mask) *** Sudheer Joseph Indian National

Re: [Numpy-discussion] saving 3d array

2013-06-15 Thread Eric Firing
On 2013/06/15 6:06 AM, Pierre GM wrote: On Jun 15, 2013, at 17:35 , Matthew Brett matthew.br...@gmail.com wrote: Hi, On Sat, Jun 15, 2013 at 2:51 PM, Sudheer Joseph sudheer.jos...@yahoo.com wrote: Thank you very much for this tip. Is there a typical way to save masked and the rest

Re: [Numpy-discussion] time to revisit NA/ma ideas

2013-06-15 Thread Benjamin Root
On Fri, Jun 14, 2013 at 6:38 PM, Eric Firing efir...@hawaii.edu wrote: A nice summary of the discussions from a year ago is here: http://www.numpy.org/NA-overview.html It provides food for thought. Eric Perhaps a BoF session should be put together for SciPy 2013, and possibly even have a

Re: [Numpy-discussion] time to revisit NA/ma ideas

2013-06-15 Thread Pierre GM
On Jun 15, 2013, at 20:38 , Benjamin Root ben.r...@ou.edu wrote: On Fri, Jun 14, 2013 at 6:38 PM, Eric Firing efir...@hawaii.edu wrote: A nice summary of the discussions from a year ago is here: http://www.numpy.org/NA-overview.html It provides food for thought. Eric Perhaps a

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Charles R Harris
On Sat, Jun 15, 2013 at 9:50 AM, Warren Weckesser warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 11:43 AM, Warren Weckesser warren.weckes...@gmail.com wrote: I'm getting a seg. fault in master when I run the tests. I'm on Ubuntu 12.04 64 bit, with Python 3.3.2 (64 bits): $

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Julian Taylor
On 15.06.2013 21:12, Charles R Harris wrote: On Sat, Jun 15, 2013 at 9:50 AM, Warren Weckesser warren.weckes...@gmail.com mailto:warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 11:43 AM, Warren Weckesser warren.weckes...@gmail.com mailto:warren.weckes...@gmail.com

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Charles R Harris
On Sat, Jun 15, 2013 at 1:15 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:12, Charles R Harris wrote: On Sat, Jun 15, 2013 at 9:50 AM, Warren Weckesser warren.weckes...@gmail.com mailto:warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 11:43

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Warren Weckesser
On Sat, Jun 15, 2013 at 3:26 PM, Charles R Harris charlesr.har...@gmail.com wrote: On Sat, Jun 15, 2013 at 1:15 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:12, Charles R Harris wrote: On Sat, Jun 15, 2013 at 9:50 AM, Warren Weckesser

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Warren Weckesser
On Sat, Jun 15, 2013 at 3:15 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:12, Charles R Harris wrote: On Sat, Jun 15, 2013 at 9:50 AM, Warren Weckesser warren.weckes...@gmail.com mailto:warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 11:43

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Warren Weckesser
On Sat, Jun 15, 2013 at 3:57 PM, Warren Weckesser warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 3:15 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:12, Charles R Harris wrote: On Sat, Jun 15, 2013 at 9:50 AM, Warren Weckesser

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Julian Taylor
On 15.06.2013 21:57, Warren Weckesser wrote: On Sat, Jun 15, 2013 at 3:15 PM, Julian Taylor @warren, can you please bisect the commit causing this? Here's the culprit: aef286debfd11a62f1c337dea55624cee7fd4d9e is the first bad commit commit

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Charles R Harris
On Sat, Jun 15, 2013 at 2:03 PM, Warren Weckesser warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 3:57 PM, Warren Weckesser warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 3:15 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:12, Charles R

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Warren Weckesser
On Sat, Jun 15, 2013 at 4:03 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:57, Warren Weckesser wrote: On Sat, Jun 15, 2013 at 3:15 PM, Julian Taylor @warren, can you please bisect the commit causing this? Here's the culprit:

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Charles R Harris
On Sat, Jun 15, 2013 at 2:23 PM, Warren Weckesser warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 4:03 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:57, Warren Weckesser wrote: On Sat, Jun 15, 2013 at 3:15 PM, Julian Taylor @warren, can you

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Charles R Harris
On Sat, Jun 15, 2013 at 2:26 PM, Charles R Harris charlesr.har...@gmail.com wrote: On Sat, Jun 15, 2013 at 2:23 PM, Warren Weckesser warren.weckes...@gmail.com wrote: On Sat, Jun 15, 2013 at 4:03 PM, Julian Taylor jtaylor.deb...@googlemail.com wrote: On 15.06.2013 21:57, Warren

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Julian Taylor
On 15.06.2013 22:33, Charles R Harris wrote: On Sat, Jun 15, 2013 at 2:26 PM, Charles R Harris charlesr.har...@gmail.com mailto:charlesr.har...@gmail.com wrote: On Sat, Jun 15, 2013 at 2:23 PM, Warren Weckesser warren.weckes...@gmail.com mailto:warren.weckes...@gmail.com

Re: [Numpy-discussion] Seg. fault when running tests

2013-06-15 Thread Julian Taylor
On 15.06.2013 22:26, Charles R Harris wrote: On Sat, Jun 15, 2013 at 2:23 PM, Warren Weckesser warren.weckes...@gmail.com mailto:warren.weckes...@gmail.com wrote: Also on 2.7. The -O3 flag seems to cause the problem. Chuck I was wrong when I changed this flag. The compiler is