[Numpy-discussion] memory address of array data?

2009-08-17 Thread Robert
Is there a function to get the memory address (int) of (contigious) ndarray data on Python level - like array.array.buffer_info() ? I'd need it to pass it to a camera function. ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org

Re: [Numpy-discussion] memory address of array data?

2009-08-17 Thread Stéfan van der Walt
2009/8/16 Robert kxrobe...@googlemail.com: Is there a function to get the memory address (int) of (contigious) ndarray data on Python level - like array.array.buffer_info() ? I'd need it to pass it to a camera function. Have a look at the array interface: x.__array_interface__['data']

Re: [Numpy-discussion] is there a better way to do this arrayrepeat?

2009-08-17 Thread Citi, Luca
As you stress on repeat the array ... rather than repeat each element, you may want to consider tile as well: np.tile(a, [10,1]) array([[0, 1, 2], [0, 1, 2], [0, 1, 2], [0, 1, 2], [0, 1, 2], [0, 1, 2], [0, 1, 2], [0, 1, 2], [0, 1, 2],

Re: [Numpy-discussion] memory address of array data?

2009-08-17 Thread Gael Varoquaux
On Sun, Aug 16, 2009 at 11:50:44PM -0700, Stéfan van der Walt wrote: 2009/8/16 Robert kxrobe...@googlemail.com: Is there a function to get the memory address (int) of (contigious) ndarray data on Python level - like array.array.buffer_info() ? I'd need it to pass it to a camera function.

Re: [Numpy-discussion] Specifying Index Programmatically

2009-08-17 Thread Michael McNeil Forbes
There is also numpy.s_: inds = np.s_[...,2,:] z[inds] (Though there are some problems with negative indices: see for example http://www.mail-archive.com/numpy-discussion@scipy.org/msg18245.html) On 8 Aug 2009, at 10:02 PM, T J wrote: On Sat, Aug 8, 2009 at 8:54 PM, Neil

Re: [Numpy-discussion] IndexExpression bug?

2009-08-17 Thread Michael McNeil Forbes
Submitted as ticket 1196 http://projects.scipy.org/numpy/ticket/1196 On 5 Jun 2009, at 4:12 PM, Robert Kern wrote: On Fri, Jun 5, 2009 at 16:14, Michael McNeil Forbes mfor...@physics.ubc.ca wrote: np.array([0,1,2,3])[1:-1] array([1, 2]) but np.array([0,1,2,3])[np.s_[1:-1]]

Re: [Numpy-discussion] is there a better way to do this arrayrepeat?

2009-08-17 Thread Chris Colbert
That's exactly it. Thanks! On Mon, Aug 17, 2009 at 5:24 AM, Citi, Lucalc...@essex.ac.uk wrote: As you stress on repeat the array ... rather than repeat each element, you may want to consider tile as well: np.tile(a, [10,1]) array([[0, 1, 2],       [0, 1, 2],       [0, 1, 2],       [0, 1,

[Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Jonathan Taylor
Hi, I am getting a strange crash in numpy.linalg.lstsq. I have put the code that causes the crash along with two data files on my website at: http://www.cs.toronto.edu/~jtaylor/crash/ I would be interested to know if this bug can be duplicated and/or if anyone has any suggestions as to why:

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread josef . pktd
On Mon, Aug 17, 2009 at 1:42 PM, Jonathan Taylorjonathan.tay...@utoronto.ca wrote: Hi, I am getting a strange crash in numpy.linalg.lstsq.  I have put the code that causes the crash along with two data files on my website at: http://www.cs.toronto.edu/~jtaylor/crash/ I would be interested

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Matthew Brett
Hi Jonathan, http://www.cs.toronto.edu/~jtaylor/crash/ I would be interested to know if this bug can be duplicated and/or if anyone has any suggestions as to why: import numpy as np A = np.load('A.npy') b = np.load('b.npy') rc = np.linalg.lstsq(A,b) produces: *** glibc detected ***

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Charles R Harris
On Mon, Aug 17, 2009 at 11:42 AM, Jonathan Taylor jonathan.tay...@utoronto.ca wrote: Hi, I am getting a strange crash in numpy.linalg.lstsq. I have put the code that causes the crash along with two data files on my website at:

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Jonathan Taylor
Hi, I am using a computer that is administered. It is an intel Ubuntu box and came with an ATLAS compiled. I thus compiled my own numpy1.3.0 against that ATLAS. I was thinking about recompiling ATLAS myself. This machine only has g77 and not gfortran on it. Will that still work? Thanks,

[Numpy-discussion] ImportError: No module named multiarray

2009-08-17 Thread Reckoner
Hi, I created a pickled file on my Windows PC, uploaded to a Linux machine and then received the following error: Python 2.5.4 (r254:67916, Feb 5 2009, 19:52:35) [GCC 4.1.2 20071124 (Red Hat 4.1.2-42)] on linux2 Type help, copyright, credits or license for more information. import cPickle

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Charles R Harris
On Mon, Aug 17, 2009 at 1:43 PM, Jonathan Taylor jonathan.tay...@utoronto.ca wrote: Hi, I am using a computer that is administered. It is an intel Ubuntu box and came with an ATLAS compiled. I thus compiled my own numpy1.3.0 against that ATLAS. I was thinking about recompiling ATLAS

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Jonathan Taylor
I compiled lapack and atlas from scratch using g77 but now numpy.test() hangs when I try to use any numpy functionality. I think I saw someone else write about this. Is this a common problem? Thanks, Jonathan. On Mon, Aug 17, 2009 at 4:38 PM, Charles R Harrischarlesr.har...@gmail.com wrote:

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Keith Goodman
On Mon, Aug 17, 2009 at 1:50 PM, Jonathan Taylorjonathan.tay...@utoronto.ca wrote: I compiled lapack and atlas from scratch using g77 but now numpy.test() hangs when I try to use any numpy functionality.  I think I saw someone else write about this.  Is this a common problem? Yes, it seems

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Jonathan Taylor
Yes... ATLAS type problems like matrix multiplication. Is there some alternative to get a working numpy going? How might I go about compiling numpy without ATLAS? I really got to get at least something working temporarily. Thanks, Jon. On Mon, Aug 17, 2009 at 5:03 PM, Keith

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Keith Goodman
On Mon, Aug 17, 2009 at 2:13 PM, Jonathan Taylorjonathan.tay...@utoronto.ca wrote: Is there some alternative to get a working numpy going?  How might I go about compiling numpy without ATLAS?  I really got to get at least something working temporarily. Just build numpy again but skip the ATLAS

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Jonathan Taylor
It seems to automatically detect it though. Specifically lapack_lite.so always seems to reference libatlas. On Mon, Aug 17, 2009 at 5:21 PM, Keith Goodmankwgood...@gmail.com wrote: On Mon, Aug 17, 2009 at 2:13 PM, Jonathan Taylorjonathan.tay...@utoronto.ca wrote: Is there some alternative to

Re: [Numpy-discussion] Strange crash in numpy.linalg.lstsq.

2009-08-17 Thread Keith Goodman
On Mon, Aug 17, 2009 at 2:27 PM, Jonathan Taylorjonathan.tay...@utoronto.ca wrote: It seems to automatically detect it though.  Specifically lapack_lite.so always seems to reference libatlas. On Mon, Aug 17, 2009 at 5:21 PM, Keith Goodmankwgood...@gmail.com wrote: On Mon, Aug 17, 2009 at 2:13

[Numpy-discussion] How to compile numpy without ATLAS support?

2009-08-17 Thread Jonathan Taylor
I am wondering how I might be able to compile numpy without ATLAS on a ubuntu machine that has an atlas deb installed. It seems that the numpy build routine automatically detects it. Thanks for any help, Jonathan. ___ NumPy-Discussion mailing list

Re: [Numpy-discussion] Indexing empty array with empty boolean array causes IndexError: invalid index exception

2009-08-17 Thread Maria Liukis
On Aug 12, 2009, at 9:25 AM, Robert Kern wrote: On Mon, Aug 10, 2009 at 14:19, Maria Liukisliu...@usc.edu wrote: Hello everybody, I'm using following versions of Scipy and Numpy packages: scipy.__version__ '0.7.1' np.__version__ '1.3.0' My code uses boolean array to filter 2-dimensional

Re: [Numpy-discussion] How to compile numpy without ATLAS support?

2009-08-17 Thread Charles R Harris
On Mon, Aug 17, 2009 at 4:25 PM, Jonathan Taylor jonathan.tay...@utoronto.ca wrote: I am wondering how I might be able to compile numpy without ATLAS on a ubuntu machine that has an atlas deb installed. It seems that the numpy build routine automatically detects it. Try BLAS=None

[Numpy-discussion] unique rows of array

2009-08-17 Thread Maria Liukis
Hello everybody, While re-implementing some Matlab code in Python, I've run into a problem of finding a NumPy function analogous to the Matlab's unique (array, 'rows') to get unique rows of an array. Searching the web, I've found a similar discussion from couple of years ago with an

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread josef . pktd
On Tue, Aug 18, 2009 at 12:30 AM, Maria Liukisliu...@usc.edu wrote: Hello everybody, While re-implementing some Matlab code in Python, I've run into a problem of finding a NumPy function analogous to the Matlab's unique(array, 'rows') to get unique rows of an array. Searching the web, I've

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread Charles R Harris
On Mon, Aug 17, 2009 at 10:30 PM, Maria Liukis liu...@usc.edu wrote: Hello everybody, While re-implementing some Matlab code in Python, I've run into a problem of finding a NumPy function analogous to the Matlab's unique(array, 'rows') to get unique rows of an array. Searching the web, I've

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread Maria Liukis
Josef, Thanks, I'll try that and will search for your question from last december :) Masha liu...@usc.edu On Aug 17, 2009, at 9:44 PM, josef.p...@gmail.com wrote: On Tue, Aug 18, 2009 at 12:30 AM, Maria Liukisliu...@usc.edu wrote: Hello everybody, While

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread Maria Liukis
On Aug 17, 2009, at 9:51 PM, Charles R Harris wrote: On Mon, Aug 17, 2009 at 10:30 PM, Maria Liukis liu...@usc.edu wrote: Hello everybody, While re-implementing some Matlab code in Python, I've run into a problem of finding a NumPy function analogous to the Matlab's unique(array,

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread josef . pktd
On Tue, Aug 18, 2009 at 12:59 AM, Maria Liukisliu...@usc.edu wrote: On Aug 17, 2009, at 9:51 PM, Charles R Harris wrote: On Mon, Aug 17, 2009 at 10:30 PM, Maria Liukis liu...@usc.edu wrote: Hello everybody, While re-implementing some Matlab code in Python, I've run into a problem of

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread josef . pktd
On Tue, Aug 18, 2009 at 1:03 AM, josef.p...@gmail.com wrote: On Tue, Aug 18, 2009 at 12:59 AM, Maria Liukisliu...@usc.edu wrote: On Aug 17, 2009, at 9:51 PM, Charles R Harris wrote: On Mon, Aug 17, 2009 at 10:30 PM, Maria Liukis liu...@usc.edu wrote: Hello everybody, While re-implementing

Re: [Numpy-discussion] unique rows of array

2009-08-17 Thread Maria Liukis
On Aug 17, 2009, at 10:03 PM, josef.p...@gmail.com wrote: On Tue, Aug 18, 2009 at 12:59 AM, Maria Liukisliu...@usc.edu wrote: On Aug 17, 2009, at 9:51 PM, Charles R Harris wrote: On Mon, Aug 17, 2009 at 10:30 PM, Maria Liukis liu...@usc.edu wrote: Hello everybody, While