Thanks for your help, I also tried the method described but I can not
get the project compiled, here is what I tried :
tar xfz ptII3.0.2.src.tar.gz
mv ptII3.0.2 ptII
export PTII=/home/franck/bin/my_PTII/ptII
cd $PTII
./configure
cd ~/bin/my_PTII
eclipse
File-New Project
Project Name :
Hmm, this sounds like an Eclipse bug tickled by Ptolemy adjusting
setting up the ptII/.classpath file.
I've seen stack traces inside eclipse 2.1.2. Rather than
reinstalling, what I usually what I ended up doing was removing my
eclipse/workspace directory and trying various things.
You could try
Good morning,
I'm a software designer in the Pasteur Institute (Paris) and I'm
involved with a workflow definition and conception for sequence analysis
(mainly). Ptolemy II seems to correspond to the core functionalities I
need and seems to be easy to customize (thanks to have made docs and UML
Hi Franck:
fyi: you may also be interested in the following Ptolemy II spin-off
called Kepler that has been used for bioinformatics and other
scientific workflows:
http://kepler.ecoinformatics.org
The first official Kepler release is planned for later this month, but
the code is
With Eclipse, usually it is necessary to run configure so that the
.classpath file is properly set up. An alternative is to set up the
project class path by hand. Locally, our Eclipse users run configure,
so the by hand section of the doc could probably use some testing
and updating.
One issue
