[PyMOL] PYMOL saving coordinates of docked molecule

Marylin, try saving using the command line instead of the pull down menu i.e save newfilename.pdb This should save everything in one file. Brian -- *** Brian J Goodfellow Departamento de Química Universidade de Aveiro 3810-193 Aveiro, Portugal Tel:

[PyMOL] What residues have I selected?

I have selected atoms near an object of interest, and extended this via byres to a selection of the other atoms that are part of the same residue. Is there any way to output a file that would have the coordinates of the atoms I have selected and the residues they comprise? Any tips appreciated.

RE: [PyMOL] Resize window problem

Martin, I would suggest updating or reinstalling the latest graphics drivers for your graphics card. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA

Re: [PyMOL] What residues have I selected?

Hi Aaron, * Aaron New aaron...@gmail.com [2006-02-09 09:36] wrote: I have selected atoms near an object of interest, and extended this via byres to a selection of the other atoms that are part of the same residue. Is there any way to output a file that would have the coordinates of the atoms

[PyMOL] dash transparency

Is it possible to adjust the dash transparency? I would like to incorporate it into a movie so that the bond would fade in and out with the cartoon/stick of the protein. Thanks. Desiree Fong