[PyMOL] pymol 0.99 msvcr71.dll startup crash

2006-02-10 Thread Guillaume LETELLIER
Hi pymol user I have been unable to run the new 0.99 version of pymol on a windows xp laptop. The app crash at startup saying it has been unable to find msvcr71.dll. Il reinstalled, old beta version 0.99beta32 and everything run perfectly ... Any idea ? Thank you Guillaume

RE: [PyMOL] pymol 0.99 msvcr71.dll startup crash

2006-02-10 Thread Warren DeLano
Guillaume, It is not clear why this is happening -- and note that it doesn't happen on every machine. Regardless, I believe you can fix it by searching for msvcr71.dll and making sure that it appears in the C:\windows\system32 directory. Please let me know if that solves the issue with

Re: [PyMOL] pymol 0.99 msvcr71.dll startup crash

2006-02-10 Thread Charlie Moad
This is a long shot but we ran into this error with matplotlib and python2.4 using MingW. Basically we removed the linking references to msvcr71 in distutils/cygwinccompiler.py, specifically in the Mingw32CCompiler class. The link is not needed, and this removed the error mentioned below.

Re: [PyMOL] pymol 0.99 msvcr71.dll startup crash

2006-02-10 Thread Alexei Korennykh
I always include msvcr71.dll with my python distributives to avoid this exact problem. get msvcr71.dll http://www.google.com/search?hl=enq=msvcr71.dllbtnG=Google+Search and place it in *the same* directory as your python app. In this case, within PyMol. Python 2.4 apps seem to ignore this

RE: [PyMOL] NAMD/dcd

2006-02-10 Thread Warren DeLano
Arturas, DCD suppot? Not yet -- we need someone to either donate, develop, or fund code to support this key MD trajectory format. Cheers, warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 .

[PyMOL] delete/create bonds in pymol

2006-02-10 Thread Vanessa Oklejas
Hi All, Does anyone know how to delete bonds between atoms in PyMol? Thanks, Vanessa

RE: [PyMOL] pymol 0.99 msvcr71.dll startup crash

2006-02-10 Thread Warren DeLano
Just FYI, According to Microsoft's own web site, developers can indeed include this file in the distribution, so we are just going to include in a Windows 0.99 release candidate 2 (0.99rc2), instead of taking the more dramatic step of rebuilding Python from source, which could potentially

Re: [PyMOL] delete/create bonds in pymol

2006-02-10 Thread Robert Campbell
Hi Vanessa, * Vanessa Oklejas vokle...@stanford.edu [2006-02-10 11:18] wrote: Hi All, Does anyone know how to delete bonds between atoms in PyMol? You can use the unbond command: PyMOLunbond ? Usage: unbond [ atom1 [, atom2 ]] You can pick the two atoms with the mouse (such that they

[PyMOL] movie of diffusion of atoms/molecules

2006-02-10 Thread Satya Arjunan
Hi all, I would like to use Pymol to visualize 3D simulation of lattice-based diffusion of molecules. The simulator provides the 3D coordinates (or the translational direction since they have fixed diffusion distance) of the molecules at everytime step. At the end of the simulation, I would