Hi David,
Regarding the first part of your question, the way to load a python
(not a PyMol) script is:
run axes.py
.. and not @axes.py. The latter is used for loading PyMol scripts
(.pml). You _can_ use python code in a .pml script, but then you
better, or in some cases have to, start with a
Just to add onto what Tsjerk had to say about running python snippets in a .pml
script. You can also encapsulate the python code in blocks like this:
python
your python code here
python end
This works with all newer version of pymol (1.0) and enhances readability of
the code quite a bit.
HTH
Hi,
Wouldn't it be better to use a program written especially for this
purpose, like dang/dangle from the richardson group, or dssp (, or
others I don't know of)?
Of course, you may have a specific reason for using pymol, so this is
just a suggestion!
gilleain torrance
On Wed, Jun 11, 2008 at
Dear All,
I'm considering purchasing a new graphics workstation for molecular
graphics and macromolecular refinement. I'm considering buying a
machine with 2 quad core xeon processors, and a nVidia Quadro FX
graphics card with 1.5 Gb of memory.
Can the current generation of software, and
Thanks very much to Tsjerk and Carsten! I now understand how to load
python scripts and can go back to using MacPyMol. This does seem to be
a place where the GUI could be clarified. In MacPyMol, the run . . .
command in the File menu is apparently just used for pymol scripts,
while the
On Wed, Jun 11, 2008 at 11:48 AM, David Goldenberg
goldenb...@biology.utah.edu wrote:
Now, could someone point me in the right direction (so to speak)
regarding translations of a molecule relative to the graphics reference
frame?
By default, the translate command works in relation to the
Hey Thanks a tonne Alan
After your tip , I got fink IDLE to load pymol without any problem . I also
got my home gentoo linux python 2.5 and idle to load pymol the same way.
Now I have full code completion to write up my pymol scripts if I idle
correctly.
On an academic note, Just wondering why
Thanks very much! Now, on to rotate.
David
Michael Lerner wrote:
On Wed, Jun 11, 2008 at 11:48 AM, David Goldenberg
goldenb...@biology.utah.edu mailto:goldenb...@biology.utah.edu wrote:
Now, could someone point me in the right direction (so to speak)
regarding translations of a
Buz Barstow wrote:
Dear All,
I'm considering purchasing a new graphics workstation for molecular
graphics and macromolecular refinement. I'm considering buying a
machine with 2 quad core xeon processors, and a nVidia Quadro FX
graphics card with 1.5 Gb of memory.
Can the current generation of
