[PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Daniel Rigden
Dear all First let me confess that my problem does not just involved pymol. However, it is hampering my use of pymol amongst other things and there must be many python experts who read this list. My problem, on a completely fresh Ubuntu 8.04 install, is that python can find modules when asked to

Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Michael Banck
On Tue, Jul 22, 2008 at 03:38:53PM +0100, Daniel Rigden wrote: First let me confess that my problem does not just involved pymol. However, it is hampering my use of pymol amongst other things and there must be many python experts who read this list. My problem, on a completely fresh Ubuntu

Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Daniel Rigden
Warren Thanks for that. That's rather what I expected/feared. I'd still be delighted to hear from anyone who may understand why Python isn't working straight out of the box. Best wishes Daniel On Tue, 2008-07-22 at 09:04 -0700, Warren DeLano wrote: Daniel, This kind of complexity

[PyMOL] distorted electrostatic surface color with PyMOL/APBS

2008-07-22 Thread Douglas Kojetin
Hi All, I am having some problems with surface display of the output from the APBS plugin distributed with PyMOL (version 1.1r0) using the color by potential on sol. acc. surf. option. Steps to reproduce the problem: 1. Load in a structure. 2. Perform the APBS calculation (execute Set

Re: [PyMOL] distorted electrostatic surface color with PyMOL/APBS

2008-07-22 Thread DeLano Scientific
Doug, Rotate transforms atomic coordinates (relative to the precomputed field). Try using turn to move the camera instead. turn y,180 etc. Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -Original Message- From: