Hello everybody,
There is a command rotate which rotates the molecule and if you save this
molecule, you'll see changes in coordinates.
There is a command move which moves the molecule but if you save the moved
molecule there'd be no changes in coordinates.
Is there any command which moves the
Hey Irina,
translate works like rotate (change of coordinates)
move works like turn (change of camera)
Type 'help move', and you be given a list of related commands at the end
of the help file.
Andreas
pouliakhina irina wrote:
Hello everybody,
There is a command rotate which rotates
Dear All,
Does anyone know of a way in which you can cap the surfaces of a map
where they are cut by the clipping planes. Ideally with a colour
related to the current map colour, and even more ideally with user-
controlled transparency?
In chimera this is the 'surface capping' option, which
Dear all,
we are interested in Molecules with Atoms unknown to pymol.
So pymol does not know the vdW radius of these atome.
Where can I define those values?
--
Joachim
Once an molecule is loaded into PyMOL, you can always
alter selection, vdw=value
e.g.
load unknown.pdb
alter unknown and symbol Xz, vdw=3.0
alter unknown and symbol Y, vdw=2.4
rebuild
etc.
Cheers,
Warren
-Original Message-
From: Joachim Reichelt
Hi Neil --
Do you mean like this raster3d example?
http://skuld.bmsc.washington.edu/raster3d/examples/slice.png
I also think this would make a great feature addition to PyMOL !
(but probably not a priority for the developers...)
-Tom
From: Neil Ranson
I am examining packing in several space groups by issuing the command
symexp foo, foo.pdb, sele, 10
If I select the whole reference molecule, I think that I should get
all the symmates within 10 A displayed. But for one of the crystals
that I am dealing with,
CRYST1 29.24 44.19 107.67
