[PyMOL] Measure surface area

2009-08-10 Thread Mirek Cygler
Hi, How can I get the measure in A2 of the surface area of the surface I display with PyMol? Mirek -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day

Re: [PyMOL] Measure surface area

2009-08-10 Thread Warren DeLano
Mirek, PyMOL isn't the optimal tool for measuring surface area -- perhaps others on the list can suggest good alternatives. The only kind of surface area PyMOL can measure well is solvent accessible area, and it is a bit slow because all it does is sum up partial areas associated with discrete

Re: [PyMOL] Measure surface area

2009-08-10 Thread Robert Campbell
Hi Mirek, On Mon, 10 Aug 2009 11:21:39 -0700 Warren DeLano war...@delsci.com wrote: PyMOL isn't the optimal tool for measuring surface area -- perhaps others on the list can suggest good alternatives. I like MSMS for this. I have a script that will calculate the area (both solvent exposed