Hi Wataru,
in addition to what Jason mentioned: Have you tried to look at the
potential mapped on the solvent accessible surface and display the
molecular surface? If you display the potential like this the colors
will be much more muted, on the other hand this is the setting you will
find most
Hi all,
On Tue, Feb 22, 2011 at 8:00 AM, Schubert, Carsten [PRDUS]
cschu...@its.jnj.com wrote:
Hi Wataru,
in addition to what Jason mentioned: Have you tried to look at the
potential mapped on the solvent accessible surface and display the
molecular surface? If you display the potential
Thank you very much for the suggestions.
I have been mapping the potential on the solvent accessible surface
and displaying the molecular surface, both in the past and present. I
have been using PDB2PQR (force field = AMBER) as well. I am wondering
whether it is just a difference in the red and
Here's a screenshot of the color scale. It appears to me that the red and blue
colors are fainter than it should be. I tried using the ramp_new command as
follows, but it is not working for me.
ramp_new ramp1, pymol-generated, [-10, 0, 10], [red, white, blue]
I would greatly appreciate any
