Hi Gary,
actually PyMOL should be optimized for red/cyan and not green/magenta.
There is no option to change the colors, sorry.
In PyMOL 1.5 anaglyph has been improved and there are is an
anaglyph_mode settings which defaults to 4 (optimized anaglyph).
Other reasonable values are 3 (half-color)
This is fixed in SVN rev 4032.
Cheers,
Thomas
Thomas Holder wrote, On 06/15/13 10:45:
Hi Rob,
this has not been fixed yet, I'm really sorry. We'll look into this
ASAP. It only affects the open-source code, apparently we missed
something when syncing with the incentive codebase.
Thank you so much Troels,
This solves my problem. But based on this, it seems that APBS In pymol
failed to find PDB2PQR.
Chen
On Tue, Jun 18, 2013 at 1:40 AM, Troels Emtekær Linnet tlin...@gmail.comwrote:
Have a look on the earlier message on this.
Two minor, but annoying, problems with the new version in Debian 7.0 64 bit/
#1 The pull down menus in the graphics windows refuse to remain open when
clicked, unless I left click and hold. Is this normal behavior?
#2. Caver 2.1.2 will not save the location of the Directory with the
Do you have linux or windows?
Do you have PDB2PQR on your system?
http://pymolwiki.org/index.php/Apbsplugin
http://www.poissonboltzmann.org/pdb2pqr
Troels Emtekær Linnet
2013/6/18 Chen Zhao chenzhaoh...@gmail.com
Thank you so much Troels,
This solves my problem. But based on this, it
Hi Chen.
If you are up for it, pdb2pqr exist in the Pymol-script repo.
http://pymolwiki.org/index.php/Git
I have made a automatic compile script.
See here:
http://pymolwiki.org/index.php/User:Tlinnet/Linux_Install#Install_script
That should fix it for you.
Try to look it through, and just write
Hi all,
We're planning to try PyMol with the leap motion device
(https://www.leapmotion.com/). Has anyone already succeeded to do so ?
Best,
Aurélien.
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That looks so cool.
Please make a video/blog of the outcome!
/Troels
Troels Emtekær Linnet
2013/6/19 Aurélien Grosdidier aurelien.grosdid...@gmail.com:
Hi all,
We're planning to try PyMol with the leap motion device
(https://www.leapmotion.com/). Has anyone already succeeded to do so ?
Hi Aurélien,
We demoed the LeapMotion controller with PyMOL at the last ACS meeting.
Getting it hooked up to PyMOL wasn't too hard, thanks to Thomas. In our
hands it wasn't ready for routine use: it was very erratic. The device
didn't do well in a real world setting as it would recognize all
