Hi Claus,
Maybe this:
fetch 1rna, async=0
as sticks
show cartoon
set cartoon_side_chain_helper, 1
set cartoon_ring_mode, 1
Cheers,
-- Jason
On Mon, Feb 10, 2014 at 2:03 PM, Kuhn, Claus-Dieter k...@cshl.edu wrote:
Hi Pymol users,
I am trying to depict RNA as sticks, however with
Hi Claus,
this works for me:
set cartoon_ring_mode, 1
set cartoon_ring_finder, 4
show cartoon
hide cartoon, elem P
Cheers,
Thomas
On 10 Feb 2014, at 15:03, Kuhn, Claus-Dieter k...@cshl.edu wrote:
Hi Pymol users,
I am trying to depict RNA as sticks, however with filled-out rings (bases
Hi Thomas,
thinks work like a charm!
Thanks a lot.
Claus
On Feb 11, 2014, at 10:50 AM, Thomas Holder wrote:
Hi Claus,
this works for me:
set cartoon_ring_mode, 1
set cartoon_ring_finder, 4
show cartoon
hide cartoon, elem P
Cheers,
Thomas
On 10 Feb 2014, at 15:03, Kuhn,
hi,
anyone else having trouble with the apbs plugin?
i keep crashing as soon as i try to do anything.
if i select 'Choose externally generated PQR'
or 'run APBS' i get this
In show error 1
alloc: invalid block: 0x2c29fb78: 0 0
Abort
this is with pymol 1.7
ubuntu 12.04
using 1FAS fetched
Hi jpd,
try running APBS directly just using the .in file generated from a failed run.
That may provide a clue as to where the problem is, i.e. within APBS itself or
within the plugin. If it is APBS, which is throwing the error you may want to
try to grab an updated version or the source code
hi,
good idea, it runs from the command line after adding
/pymol/ext/lib to my library path
but the plugin still crashes.
something is odd about my APBS plugin setup.
if i even just click to change the file locations
it crashes.
the other plugins seem fine.
thanks
jpd
