Re: [PyMOL] Analysis of docking poses from 2 nmr-ensembles

Hi James - First, it will be useful to split the states. split_states ensemble1 split_states ensemble2 delete ensemble1 delete ensemble2 Then, superimpose all structures onto a reference structure for

[PyMOL] Analysis of docking poses from 2 nmr-ensembles

Dear Pymol users! I am studying protein-protein assosiation using 2 different proteins as test case by means of variety of computational methods. For my particular caseI need to compare binding poses emerged as the result of protein-protein docking (ensemble 1: which consists of 20 snapshots

[PyMOL] Mutagenesis

Hi!  I need to perform an operation to mutate five amino acid residues in five positions of a pdb file to other19 standard amino acid residues but I need a help with scripts (or commands). Could anyone give a hint on how to do it ?  Thanks !Sara.

Re: [PyMOL] Getting Started

Hi Melanie, have you gone through the 'movie school' ( http://www.pymolwiki.org/index.php/MovieSchool) ? I know that biomedical animators also like to work with the molecular flipbook (https://www.molecularflipbook.org/) or bioblender ( http://www.bioblender.eu/). Cheers, Julian On Wed, Jun 8,

[PyMOL] APBS plugin on pymol 1.5 does not work

Hello I recently installed PyMOL version 1.5 no my MAC 10.9 using HomeBrew. There were no problems with the installation at all however the APBS plugin when loaded it gives me this error: Error: 4 Exception in Tk callback Function: at 0x106691758> (type: ) Args: () Traceback (innermost