[PyMOL] APBS with ions

2021-11-01 Thread Kamil Steczkiewicz
Hi, How to include Ca/Zn ions when using APBS built into Pymol? I'm switching to CHARMM in command line options; CHARMM has CAL and ZN2 atoms already defined in the DAT file. But there's still no difference in electrostatics maps with and without ions in the structure. Also, the default

Re: [PyMOL] [EXTERNAL] No cartoon view for custom PDB file

2021-07-07 Thread Kamil Steczkiewicz
You got error in column positioning in PDB file - I added two whitespaces after ATOM mark. It probably couldn't parse the PDB file properly as the PDB file is column-specific format. It works now. Chk attached file in PyMOL. Kamil wt., 6 lip 2021 o 23:13 Neena Susan Eappen napisaƂ(a): > Hello