Re: [PyMOL] New MacBook

the ribosome in real time. Mike On Fri, May 19, 2006 at 09:24:02AM +0200, Marc Saric wrote: I'm very interested in knowing whether PyMOL is usable on the new MacBook considering that it has Intel integrated graphics. Concerning integrated graphics: The Aqua-Desktop should be accelerated

Re: [PyMOL] Pymol Query

it is considered a feature NOT to center the display (i.e. you see nothing after loading)). -- Bye, Marc Saric

[PyMOL] Re: New user needs help! (Michael Morbious)

-line exe-file for Windows. There is certainly a more elegang Pymol-only sollution for this. -- Bye, Marc Saric

Re: [PyMOL] Pymol and batch-queue jobs

to a batch-queueing-system from a Tk-GUI or offline (save script for later execution). - -- Bye, Marc Saric http://www.marcsaric.de -BEGIN PGP SIGNATURE- Version: GnuPG v1.2.4 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFBKuf2vKxJUF29wRIRAqKnAJ0UowAIsyYyg5

[PyMOL] Pymol and batch-queue jobs

something like that on my own and contribute it, but maybe someone allready has done it (don't want to reinvent the wheel)). Thanks in advance. - -- Bye, Marc Saric http://www.marcsaric.de -BEGIN PGP SIGNATURE- Version: GnuPG v1.2.4 (GNU/Linux) Comment: Using GnuPG with Mozilla - http

[PyMOL] spectrum

to put a color-gradient-bar below a picture which shows numbers as well, and for that I need to know the ranges of blue, green, yellow, etc. Or is it possible to do this from within Pymol automatically (like for iso-surfaces)? Thanks in advance. -- Bye, Marc Saric

RE: [PyMOL] embeding pymol in a web page

and the happy few using Mozilla can't use this tool. Therefore an alternative to Chime, which would support Mozilla and the other OS-platforms should be preferred. Keep up the good work! - -- Bye, Marc Saric http://www.marcsaric.de -BEGIN PGP SIGNATURE- Version: GnuPG v1.2.2 (GNU/Linux

Re: [PyMOL] 2 Questions for the User Community

is essentially a C-alpha trace. Due to a bug in 0.93, this was a locked seting anyway, so any recent scripts probably already make this assumption. Would also be ok. No objection unless you make this a hard-coded option (which is not the case). -- Bye, Marc Saric http://www.marcsaric.de

[PyMOL] Release in progress...

security-measure: Typing q Return (will immediately quit Pymol). - -- Bye, Marc Saric http://www.marcsaric.de -BEGIN PGP SIGNATURE- Version: GnuPG v1.0.7 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQE/m7VYvKxJUF29wRIRArhbAJ928s/6nrRnCqg4mfEEAPO4WarTMQCgx08I

[PyMOL] Re: PyMOL-users digest, Vol 1 #381 - 4 msgs

from what you would expect from a look at the OpenGL-window). - -- Bye, Marc Saric http://www.marcsaric.de -BEGIN PGP SIGNATURE- Version: GnuPG v1.0.7 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQE/L1aqvKxJUF29wRIRAl9aAKCL5Tg15FaMCzgMPv9zHCeWKxK9GwCgpdKc

[PyMOL] Roving-problems in 0.88

for 1025 atom positions. ObjectMap: Normalizing: mean = 0.079996 stdev = 0.284775. /tuxprog/bin/pymol: line 12: 6303 Segmentation fault $PYMOL_PATH/pymol.exe $* Besides that, everything seems to work fine. -- Marc Saric http://www.marcsaric.de

[PyMOL] Re: Stereo3D hardware recommendation

would go for the Nuvision, they are good enough. If -for some reason- you really want maximum-sized shutters, you need Crystaleyes. Maybe you can test at least one of the two at your next crystallography department or CAD-office? -- Bye, Marc Saric Max-Planck-Institut fuer molekulare

[PyMOL] Pymol 0.82 and Python 2.2

, might be due to python itself, checking for versions. I think, for the time beeing, one could either install a separate Python2.1 for Pymol or just ignore the messages. And you could recompile Pymol from source I think. In this case, it should not complain anymore. -- Bye, Marc Saric Max

[PyMOL] RE: pymol-on-linux questions

) normaly arise from the surrounding stuff, i.e. type of graphics-memory, clockspeeds (memspeed beeing more important than GPU-speed, as the GeForce is bandwith-limited) etc. Bottomline: I would not expect a huge performance-improvement. Hope this helps. -- Bye, Marc Saric Max-Planck-Institut

[PyMOL] RE: easy (?) question (DeLano, Warren)

a linear C-alpha trace (no smoothing), set ribbon_sampling 1 This is a bit unobvious (at least for me) wouldn't it be good to have this as an extra menu-point (i.. CA-trace)? -- Bye, Marc Saric

[PyMOL] Some experiences with the new 0.78-rpms

disatvantage is the somewhat too small font in the Tk-log-window. So in essence: The Redhat72-rpms work on SuSE 7.3 also. --- Marc Saric

[PyMOL] Installing Pymol on SuSE 7.3 again

it is ok. Cheers! -- Bye, Marc Saric Max-Planck-Institut fuer molekulare Physiologie Otto-Hahn-Str.11 44227 Dortmund phone:0231/133-2168