Re: [PyMOL] Color scale changed in APBS?

2011-02-22 Thread Schubert, Carsten [PRDUS]
Subject: [PyMOL] Color scale changed in APBS? Dear PyMOL users: I recently used the APBS plugin (v1.3) to display the surface potential of a protein. I noticed that the charged surfaces were much more lightly colored, compared with the surface colors I have calculated in the past (maybe

Re: [PyMOL] Color scale changed in APBS?

2011-02-22 Thread Michael Lerner
@lists.sourceforge.net Subject: [PyMOL] Color scale changed in APBS? Dear PyMOL users: I recently used the APBS plugin (v1.3) to display the surface potential of a protein. I noticed that the charged surfaces were much more lightly colored, compared with the surface colors I have calculated

[PyMOL] Color scale changed in APBS?

2011-02-22 Thread Wataru Kagawa
[mailto:wkag...@aoni.waseda.jp] Sent: Monday, February 21, 2011 10:04 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Color scale changed in APBS? Dear PyMOL users: I recently used the APBS plugin (v1.3) to display the surface potential of a protein. I noticed that the charged surfaces

Re: [PyMOL] Color scale changed in APBS?

2011-02-22 Thread Wataru Kagawa
- From: Wataru Kagawa [mailto:wkag...@aoni.waseda.jp] Sent: Monday, February 21, 2011 10:04 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Color scale changed in APBS? Dear PyMOL users: I recently used the APBS plugin (v1.3) to display the surface potential of a protein. I

Re: [PyMOL] Color scale changed in APBS?

2011-02-21 Thread Jason Vertrees
Hi Wataru Kagawa, The intensity of the colors depends on the values of the data and the color ranges on the color ramp. In fact, in editing mode, CTRL-dragging can control the upper/lower values of the ramp, effecting the coloring. On top of that, you can assign colors to different numerical