Youzhong, If you're still having trouble getting what you want with Michael's APBS Plugin, here's how I might display two such maps using PyMOL commands directly:
load pdbset1.pqr load pdbset_1.dx load pdbset3.pqr load pdbset_3.dx ramp_new ramp1, pdbset_1, [ -3, 0, 3] ramp_new ramp3, pdbset_3, [ -3, 0, 3] show surface set surface_ramp_above_mode set surface_color, ramp1, pdbset1 set surface_color, ramp3, pdbset3 Note that the surface_ramp_above_mode setting colors surfaces based on the potential that would be felt by an atom in contact with the surface, as opposed to the potential at the molecular surface itself (which is less meaningful, since no atom could ever feel such a potential). Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -----Original Message----- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Youzhong Guo Sent: Thursday, June 26, 2008 7:28 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] How to display two or multiple eleectrostatic mapssimultaneously with PyMol? Dear All, I have difficulty to display two electrostatic maps with PyMol at the same time . I can correctly display one map with pdbset1.pqr and pdbset_1.dx as in slide No.1. I can also correctly display one map with pdbset3.pqr and pdbset_3.dx as in slide No.2. However, when I tried to load all of those four files with PyMol, what I can get is as in slide No. 3 or No.4. As you can see in slide No.3 or No.4 the map is not correct as expected. Please download my files from the following link and see if you can simultaneously display two maps as shown in slide No.1 and No.2 with PyMol. https://webspace.utexas.edu/yg387/Electron_static_potential.zip Thanks in advance, Youzhong ------------------------------------------------------------------------- Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
