Hi,
I would like to know how to do structure based superposition using PyMol for
3 or more structures. Please help me out.
Thanks,
-Suda
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Hi Suda,
Do you mean different structures of the same molecule or different
molecules? For a multistate object, there is intra_fit. for selections
comprising multiple objects it's not currently possible. But it's
being worked on.
Cheers,
Tsjerk
On Mon, Aug 29, 2011 at 8:43 AM, Suda Ravindran
Hi Suda and Tsjerk,
there is alignto which used cealign. There is also in the menu Action
align all to this which uses cmd.util.mass_align (and that uses
cmd.align).
On Robert Campbell's site there is the align_all.py script:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/
On my
Dear Suda,
cealign can be used to do structure based superposition
PyMOL cealign target, mobile
However, it's a pair-wise based alignment. You have to align two
structures each time.
Hope this helps.
Zhijian Xu
Suda Ravindran wrote:
Hi,
I would like to know how to do structure based
