[PyMOL] Pymol error in Mac OS X 10.8.2

I am having some issues after installing pymol in Mac OS 10.8.2. It seems the program is installed but when I try to open in using command line pymol it doesn't show the 'Molecular Graphics System' window but shows only the 'Pymol Viewer' window. In the terminal I have

Re: [PyMOL] Pymol error in Mac OS X 10.8.2

what method did you use for installation? -- David Hall On Wednesday, May 1, 2013 at 11:53 AM, Rhitankar Pal wrote: I am having some issues after installing pymol in Mac OS 10.8.2. It seems the program is installed but when I try to open in using command line pymol it doesn't show

Re: [PyMOL] PyMOL on the Mac

Subject: Re: [PyMOL] PyMOL on the Mac Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting. set default,[cartoon, lines, nonbonded, cbaw

Re: [PyMOL] PyMOL on the Mac

To: Jason Vertrees Cc: pymol-users@lists.sourceforge.net; David Hall Subject: Re: [PyMOL] PyMOL on the Mac Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything

Re: [PyMOL] PyMOL on the Mac

: Re: [PyMOL] PyMOL on the Mac Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting. set default,[cartoon, lines, nonbonded, cbaw

Re: [PyMOL] PyMOL on the Mac

These settings affect the atomistic representations upon instantiation. So, keeping it simple and very fast is best. I might add a few more settings along these lines, but I don't think I'm going to make it totally generic. Here's another reason why I love PyMOL: 5 minutes of coding gets you a

Re: [PyMOL] PyMOL on the Mac

I would be a fan of auto_show_cartoon. Also, if you set more than one of these, it will auto show more th one representation. Coolness. If anyone is curious, I just figured out what auto_show_selections appears to do (it is on by default), so I'll try to document that tomorrow. Thanks,

Re: [PyMOL] PyMOL on the Mac

David, You may remember writing: A Pymol Quicklook plugin. My primary purpose would be for pses, but you might as well pick up pdbs and other formats supported by pymol along the way. For pdb files, I wouldn't want the default pymol view of lines colored by atom with green carbons being

Re: [PyMOL] PyMOL on the Mac

Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting. set default,[cartoon, lines, nonbonded, cbaw] The default value as pymol starts up now

Re: [PyMOL] PyMOL on the Mac

On 20 Jan 2010, at 22:07, Jason Vertrees wrote: PyMOLers, I just want to quickly reiterate: PyMOL will still be supported on the Mac--no need to worry. Even though other Schrodinger software doesn't run on the Mac, PyMOL will. Actually, I expect that schrodinger will port their own

Re: [PyMOL] PyMOL on the Mac

.pymolqlrc type file. Hopefully I'm out of ideas nows, David - Original Message From: Jason Vertrees jason.vertr...@schrodinger.com To: pymol-users@lists.sourceforge.net Sent: Wed, January 20, 2010 4:07:45 PM Subject: [PyMOL] PyMOL on the Mac PyMOLers, I just want to quickly

[PyMOL] PyMOL on the Mac

PyMOLers, I just want to quickly reiterate: PyMOL will still be supported on the Mac--no need to worry. Even though other Schrodinger software doesn't run on the Mac, PyMOL will. MacPyMOL will live on. Best, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e