Re: [PyMOL] Selections don't work on structures loaded using, 'fetch' command

2016-02-29 Thread Timofey Tyugashev
-requ...@lists.sourceforge.net пишет: > Message: 7 > Date: Mon, 29 Feb 2016 08:35:13 -0500 > From: Thomas Holder<thomas.hol...@schrodinger.com> > Subject: Re: [PyMOL] Selections don't work on structures loaded using > 'fetch' command > To: Timofey Tyugashev<tyugas..

Re: [PyMOL] Selections don't work on structures loaded using 'fetch' command

2016-02-29 Thread Thomas Holder
Hi Timofey, See http://pymolwiki.org/index.php/ignore_case Note: The wiki page mentions 1.8.0.0 (official release), but the SVN repo had the change since 1.7.7.1 (https://sourceforge.net/p/pymol/code/4123/ ). Cheers, Thomas On 29 Feb 2016, at 06:23, Timofey Tyugashev

[PyMOL] Selections don't work on structures loaded using 'fetch' command

2016-02-29 Thread Timofey Tyugashev
If I load my own pdb file and issue a simple select command like 'select resi 10' it works fine, producing something like 'selection "sele" defined with 6 atoms'. However if I load the same structure using fetch command selections stop working, 'select resi 10' results in 'selection "sele"

Re: [PyMOL] Selections don't work on structures loaded using 'fetch' command

2016-02-29 Thread Timofey Tyugashev
Sorry, it's actually part false alarm and part a completely different problem. For false alarm:Structure retrieved by 'fetch' simply lacked residue numbered 10, why my own file was already repaired and had it fine. For different problem: For some reason it turns out that 'select' is

Re: [PyMOL] Selections

2004-04-15 Thread Michael George Lerner
definately worth your time to learn how to write Python scripts. I'd also recommend looking through the PyMOL source itself. I don't have anything much to say about selections, though .. I've always been quite happy with simple PyMOL selections. -michael As an example, how could I select just the tails

Re: [PyMOL] Selections

2004-04-15 Thread Robert Campbell
Hi Jason, * Jason Vertrees javer...@utmb.edu [2004-04-14 22:55] wrote: Master Users, I'm a bit new to PyMol and still trying to master selections. I've read the documentation and played with quite a few macromolecules now and still have some problems with selections. For example, I

RE: [PyMOL] Selections

2004-04-15 Thread Warren DeLano
] On Behalf Of Robert Campbell Sent: Thursday, April 15, 2004 8:39 AM To: PyMol Users List Subject: Re: [PyMOL] Selections Hi Jason, * Jason Vertrees javer...@utmb.edu [2004-04-14 22:55] wrote: Master Users, I'm a bit new to PyMol and still trying to master selections. I've read

[PyMOL] Selections

2004-04-14 Thread Jason Vertrees
Master Users, I'm a bit new to PyMol and still trying to master selections. I've read the documentation and played with quite a few macromolecules now and still have some problems with selections. For example, I found a PDB online called 'pope.pdb' (a cool lipid bilayer;

[PyMOL] selections

2002-02-25 Thread Michael S. Cosgrove, Ph.D.
Hi, I am new to pymol. I was wondering if someone could help me with selecting multiple noncontinuous residues with the same name. For example, I have tried the following: select name1, a/79/ .# to select a single residue, select name2, a/79:85/ ..# to select a continuous string of