Re: [PyMOL] Visualizing two surfaces using APB2tools2.1

2011-02-02 Thread Yarrow Madrona
Thank you very much. I had trouble with Jason's method but the second one worked great! Now I have beautifull e-static surfaces to show at my talk. Thank you! -Yarrow Thanks for the nice writeup, Jason! There are two main ways that I know of to visualize two potentials at once. This is

Re: [PyMOL] Visualizing two surfaces using APB2tools2.1

2011-02-01 Thread Jason Vertrees
Hi Yarrow, Does anyone know how to visualize the surface potentials of two molecules simoutaneously using the APBS Tools2.1 plugin?  Thanks. As Michael wrote the APBS plugin, he might have more to offer, but here's how I'd do it. I used this technique to look at two similar proteins

Re: [PyMOL] Visualizing two surfaces using APB2tools2.1

2011-02-01 Thread Michael Lerner
Thanks for the nice writeup, Jason! There are two main ways that I know of to visualize two potentials at once. This is one. If you're looking at, e.g., a protein-protein interface, it may be useful to map two different electrostatic potentials to two different PyMOL objects. Here's my

[PyMOL] Visualizing two surfaces using APB2tools2.1

2011-01-31 Thread Yarrow Madrona
Hello, Does anyone know how to visualize the surface potentials of two molecules simoutaneously using the APBS Tools2.1 plugin? Thanks. -Yarrow -- Yarrow Madrona Graduate Student Molecular Biology and Biochemistry Dept. University of California, Irvine Natural Sciences I, Rm 2403 Irvine, CA