Re: [PyMOL] allign multiple freme in pymol

2018-07-31 Thread Thomas Holder
Hi Abhik and Jared, There is also "intra_fit" and "multifilesave": https://pymolwiki.org/index.php/intra_fit https://pymolwiki.org/index.php/multifilesave Example: intra_fit name CA multifilesave model{state:06}.pdb, state=0 Cheers, Thomas > On Jul 30, 2018, at 9:46 PM, Jared Sampson

Re: [PyMOL] allign multiple freme in pymol

2018-07-30 Thread Jared Sampson
Hi ABhik -  You'll want to have a look at the `split_states` command.  Something like the following should get you going.  Note the embedded multiline `python` block.  # Using 1nmr as a sample structure fetch 1nmr, async=0 split_states 1nmr, prefix=model python # starting at state 2, align

[PyMOL] allign multiple freme in pymol

2018-07-30 Thread abhik . ghosh
Hello All I have a pdb file containing 10 frames . Now I want to align all frame one by one in pymol and then want to save the final coordinate. How it can be done? All suggestions are welcome Thanking you. ABhik --