Rongjin, PyMOL can certainly color surfaces by atom color and other properties.
show surface color green, elem c color violet, elem n+o But Grasp's hydrophobicity function may be doing something more sophisticated then that... Cheers, Warren > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > gu...@umbi.umd.edu > Sent: Wednesday, February 18, 2004 7:12 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] molecular surface colored by hydrophobicity > > Dear all, > I am preparing a figure of a molecualr surface, colored by > the hydrophobicity of surface residues. Can pymol do this job? > How about showing atom C* in a color, and N* and O* in another color? > > In fact I have tried GRASP but failed in coloring the > surface. I used "r=hyd", but could not color the surface of > those redisues. This is an old version of grasp (1.0?). I am > not familiar with this program. If anybody can tell me the > correct way of doing it in grasp, it will also be greatly appreciated. > > Rongjin Guan > > > > > > ------------------------------------------------------- > SF.Net is sponsored by: Speed Start Your Linux Apps Now. > Build and deploy apps & Web services for Linux with a free > DVD software kit from IBM. Click Now! > http://ads.osdn.com/?ad_id=1356&alloc_id=3438&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
