Hi Kyle,
The approach you listed looks about right to me. Using conda commands from
the PyMOL commandline in the bundles don't seem to be working in those
builds, but should be fine if you use another terminal. Either way, I will
reach out to you directly.
Best,
Jarrett J.
On Mon, Mar 27, 2023
<https://aka.ms/o0ukef>
From: Jarrett Johnson
Sent: Monday, March 27, 2023 4:23:30 PM
To: Kyle Moorman
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] PLEASE HELP
EXTERNAL EMAIL : Exercise caution when responding, opening
Jenna,
Use PyMOL to download the biological unit:
fetch 1b8e, type=pdb1
split the states out (you'll notice it's a two-state object)
split_states 1b8e
You can also create symmetry expansion via, A Generate Symmetry Mates
within X A, from your original object.
Cheers,
-- Jason
On Tue,
Hello Jenna,
On Tue, 06 Apr 2010 00:36:38 -0400 JiangJiang Liu jli...@uwo.ca wrote:
When I open the pdb file 1B8E (a homodimer protein) through
pymol I can only see a monomer shown in the screen. Now I know the
biological dimer is produced through crystallographic symmetry
Hi Rob, Jenna,
Be aware that the symmetry data (symexp) need not be equal to the
biological unit transformations (remark biomt), even though it will
often match.
And since I'm posting anyway, here's another possibility:
load 1b8e.pdb, A
create B,A
alter_state 1,B,(x,y,z)=(-x,y,33.43-z)
Cheers,
