Does surface coloring work with ChemPy bricks? I took the script in
examples/devel/brick01.py and changed it to make a ChemPy brick that goes
from [0,0,0]--[5,5,5] like so
... examples/devel/brick01.py ...
brik.setup_from_min_max(
[0.0,0.0,0.0],
[5.0,5.0,5.0],
[0.5,0.5,0.5])
...
Hi, I was wondering if Pymol is capable of setting
different stick thickness for different residues of a
molecule. I tried
set stick_radius=0.25
show sticks, resi 1-2
set stick_radius=0.1
show sticks, resi 12-15
It appears that the stick_radius variable is global,
and it changes the thickness
Dear Frank,
try:
create forSticks1, resi 1-2
show sticks, forSticks1
set stick_radius, .25, forSticks1
create forSticks2, resi 12-15
show sticks, forSticks2
set stick_radius, .1, forSticks2
By using create, you create a new named object with its own settings
database. The new object's
Hello all,
We'd like to render some cartoon representations of protein structures
in a manner similar to the style of Jane Richardson. Basically white,
opaque surfaces (no reflections) with black outlines at each of the
edges.
Here's a link to give you an idea what we're looking for (Figure
Keana,
This is a problem with at least one mac web browser...for some
reason the .gz gets removed from the file upon download, but the file is
still compressed.
If you replace the .gz, then the file will uncompress and open
properly when you double-click on it.
Cheers,
Todd,
Unfortunately that is not a problem PyMOL was designed to solve, and off the
top of my head I can't think of any way to bend it around to do this --
you're talking about a different rendering scheme. I think it amounts to
the following: trace every sharp edge, and outline every round
