[PyMOL] Color by residue type

2007-04-09 Thread Mirek Cygler
Hi, I would like to color residues by their type using (more or less) standard colors (e.g. like in sPDBv). Could not find a command in Pymol that would do that. Did I miss it? Is there a way to avoid doing this one residue type at the time? Thanks for you help,

Re: [PyMOL] Single transparent sphere

2007-04-09 Thread Michael Lerner
The pseudoatom business looks very cool. I'll have to try it out. In the meantime, I wanted to mention that you certainly can make transparent CGOs. Here's some code that I wrote to visualize dock output in our lab. The files it reads in have lines that look like junk x y z r junk temp junk