[PyMOL] compiling pymol on Mac intel

2007-06-27 Thread Alan
Hi List! I am trying to compile pymol via 2 ways on my Macbook pro Intel: 1) Via fink: fink install pymol-py24 (installs version 0.99-1005) All seems to be ok, but when running /sw/lib/pymol-py24/bin/pymol, I got this: X Error of failed request: BadAlloc (insufficient resources for operation)

Re: [PyMOL] spectral coloring

2007-06-27 Thread Robert Campbell
Hi Martin, * Martin Höfling martin.hoefl...@physik.uni-muenchen.de [2007-06-26 15:15] wrote: Hi there, i am trying to map b factors on a surface representation. I am using spectrum b,blue_white_red,mymol and the colors are fine. Is there a way to fine tune the color spectrum, such as

[PyMOL] How to dislocate independently each structure when you have loaded two structures?

2007-06-27 Thread Júlio César
Hi, I have loaded two structure and tried to dislocate one independent on the other, but I couldn't. Is it possible to do thit? I would like to know how to dislocate independently each structure when you have loaded two structures? Thanks, Julio Cesar da Silva -- SAXS /

Re: [PyMOL] How to dislocate independently each structure when you have loaded two structures?

2007-06-27 Thread Robert Campbell
* Andreas Henschel a...@biotec.tu-dresden.de [2007-06-27 15:49] wrote: Hi Julio, If I understood you right, you can simply use translate, eg.: translate [20,0,0], mol_to_dislocate The important thing is that turn and move modify the camera, while translate and rotate modify the

Re: [PyMOL] Sticks and distances with individual transparencies

2007-06-27 Thread DeLano Scientific
Tsjerk, Sometimes the archives can be misleading... Actually, settings do now work on selections and bonds as well (with set_bond). However, only a small set of per-atom and per-bond settings are currently implemented, since each can require a significant amount of new code. Cheers, Warren

Re: [PyMOL] compiling pymol on Mac intel

2007-06-27 Thread DeLano Scientific
Alan, Hmm...the Darwin setup.py build is definitely broken...I'll need to look into why -- it shouldn't be trying to link to any MacPyMOL symbols (MacPyMOL is beyond the scope of the open-source project). In the meantime, you can probably try an in-place autotools-based compile instead.

Re: [PyMOL] compiling pymol on Mac intel

2007-06-27 Thread DeLano Scientific
Alan, Okay, I found the glitch with the OSX defines -- my bad. However, I also rediscovered what the hidden difficultly is with compiling PyMOL under X11, and that is: Mac OS X's built-in python has an Aqua-based Tcl/Tk/Tkinter implementation NOT bound to X11 and which does not work with PyMOL