Re: [PyMOL] The CNT pdb file with the information about simulation box size

2009-11-28 Thread Jason Vertrees
Cun, To answer your last outstanding question, I don't think PyMOL saves anything beside the basic atom info for PDB files. PSE files--PyMOL session files--save everything. If you're using linux or a Mac, you can always just paste the header back on. An unideal solution, but it will work. For

[PyMOL] Show hydrogen bonds in current object only

2009-11-28 Thread Chimed Jansen
Hello PyMol users, I have a lot of pdb files open and I've superposed them to compare the pockets. Now I would like to see the hydrogen bonds formed by each ligand to the protein its been crystalised with. I would ideally like an object which shows hydrogen bonds between the ligand(s) present (I