[PyMOL] How to get pymol 1.4

2011-03-23 Thread Abhinav Verma
How do I download pymol 1.4 from the svn. I used svn co https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol but i still got the 1.3 version. Is the 1.4 version restricted to incentive downloads only?? Thanks,

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Abhinav Verma
And why would that be? I thought that pymol is open source and till Warren was there all updates were available in the open source domain and incentive builds were limited to windows executable and involving support!! On Wed, Mar 23, 2011 at 11:15 AM, Mark J van Raaij

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread lists
a) you're mistaken, Warren's incentive builds had extra features. Also, Warren had announced pretty clear plans of adding more features to the incentive builds and not releasing them open source for several years b) if you've been following the list, Jason has stated that many of the 1.4

Re: [PyMOL] alter_state

2011-03-23 Thread kanika sharma
I get the mistake.. Thanks all.. -- Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro

Re: [PyMOL] alter_state

2011-03-23 Thread Thomas Holder
Hello kanika, your multiplication and your python syntax for multiplication are wrong, it must be: alter_state 1, 3m8v_a, (x,y,z)=((-0.5*x+0.866025*y), (0.866025*x+0.5*y),-z) For REMARK 350, check these scripts: http://www.pymolwiki.org/index.php/BiologicalUnit

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Abhinav Verma
Thanks for pointing out Jason's email. I missed that. And at the same time I shall learn to read and understand the fine-print under open source. On Wed, Mar 23, 2011 at 12:12 PM, li...@cowsandmilk.net wrote: a) you're mistaken, Warren's incentive builds had extra features. Also, Warren had

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Michael Lerner
In addition to David's excellent email, I would like to point out that Jason is extremely dedicated to the open-source future of PyMOL, so much so that I don't think a better PyMOL maintainer could have been chosen. I think that, for people who have been using/contributing to PyMOL for a long

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Stephen P Molnar
Going to www.pymol.org, clicking on OpenSource and then sf.net/projects/pymol/develop followed by Download PyMOL Molecular Graphics System will download pumol-1.3r2-src.tar.bz2. I would like to know if, and when, 1.4 will be available for downloading. Stephen P. Molnar, Ph.D.

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Mark J van Raaij
read Jasons mail: Greetings, I'm delighted to announce that the Incentive build of PyMOL v1.4 has been released. Current subscribers can download the binaries for Windows, Mac and Linux from http://pymol.org/dsc/ip and access documentation and videos from

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Jason Vertrees
Hi Stephen, I would like to know if, and when, 1.4 will be available for downloading. Yes, PyMOL v1.4 will be released to the open-source. I will prepare the v1.4 release file soon (hopefully less than two weeks' time). As Michael noted, it's nothing insidious: within hours of releasing the

Re: [PyMOL] How to get pymol 1.4

2011-03-23 Thread Stephen P Molnar
Thank you for your reply. I was too much in a hurry to write. I shall curb my impatience and wait for your announcement. Stephen P. Molnar, Ph.D. Life is a fuzzy set Foundation for Chemistry Stochastic and

[PyMOL] Logging the sculpt wizard

2011-03-23 Thread Martin Hediger
Dear List I'm trying to automate the following sequence of steps in a PyMOL python script: 1. Start the mutagenesis wizard 2. Mutate a reside according to an input from the script (some integer to specify the id) 3. Apply and close the mutagenesis wizard 4. Start the Sculpt Wizard 5. Fix all

Re: [PyMOL] Logging the sculpt wizard

2011-03-23 Thread Jed Goldstone
You might want to try using Modeller instead. http://www.salilab.org/modeller/wiki/Mutate%20model It does higher level modelling. Jed Martin Hediger wrote: Dear List I'm trying to automate the following sequence of steps in a PyMOL python script: 1. Start the mutagenesis wizard 2. Mutate a