[PyMOL] issue with label command as in: label *, name; color red

2018-11-14 Thread Xiang-Jun Lu
quot;label *, name" is followed by another command, on the same line. I am using "Version 1.8.7.0 Open-Source" on macOS. Any ideas? Thanks, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web: http://x3dna.org/ Forum: http://forum.x3dna.org/ __

Re: [PyMOL] DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL

2020-05-23 Thread Xiang-Jun Lu
out the wrong link to nar/gkz1222 -- I was reading that interesting paper on the U•A-U-rich RNA triple helix. The correct URL to the DSSR-PyMOL NAR paper is: https://doi.org/10.1093/nar/gkaa426 Best regards, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web: http://x3dna.org/ Foru

Re: [PyMOL] [EXTERNAL] create a 26 bp RNA from a 13 bp system

2021-11-12 Thread Xiang-Jun Lu
> [e] no matched residue for option --frame > > Thanks for your help. > > Best, > Amir > > > On Fri, Nov 12, 2021 at 11:00 AM Xiang-Jun Lu <3dna...@gmail.com> wrote: > >> Hi Amir, >> >> Please have a look at the announcement "No mor

Re: [PyMOL] [EXTERNAL] create a 26 bp RNA from a 13 bp system

2021-11-12 Thread Xiang-Jun Lu
Dear Blaine, On Fri, Nov 12, 2021 at 10:14 AM Mooers, Blaine H.M. (HSC) < blaine-moo...@ouhsc.edu> wrote: > Hi Xiang-Jun Lu, > > Thanks for proving me wrong. Congratulations on your duplicated model! > Please share the commands that you used with DSSR to generate the

Re: [PyMOL] [EXTERNAL] create a 26 bp RNA from a 13 bp system

2021-11-12 Thread Xiang-Jun Lu
Hi Amir, Please have a look at the announcement "No more grant funding for 3DNA/DSSR" ( http://forum.x3dna.org/site-announcements/no-more-grant-funding-for-3dnadssr/) on the 3DNA Forum. DSSR results are reproduced, period. Best wishes, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Em

[PyMOL] Cover images of the RNA Journal generated by the NDB using DSSR and PyMOL

2022-11-29 Thread Xiang-Jun Lu
and the December 2022 issue at https://rnajournal.cshlp.org/content/28/12.cover-expansion Users can easily generate such highly simplified, yet informative images of nucleic acid structures using http://skmatic.x3dna.org Best regards, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web