a new thread
> with an event loop, which will cause 100% CPU usage (at least with "-c").
>
> Cheers,
> Thomas
>
> > On Mar 15, 2018, at 1:35 AM, Yang Su <s...@crystal.harvard.edu> wrote:
> >
> > Dear List,
> >
> > I would lik
Dear List,
I would like to use some of the pymol capabilities with my other python
code in jupyter notebook. But after running
import pymol
pymol.finish_launching(['pymol', '-qc'])
CPU usage stays at 100% for the python process. After
pymol.cmd.quit()
CPU usage returns to normal. I see the
l2
> p = pymol2.PyMOL()
> p.start()
> p.cmd.fragment('ala')
> p.cmd.show_as('sticks')
> p.cmd.zoom()
> p.cmd.png('/tmp/ala.png', 1000, 800, dpi=150, ray=1)
> p.stop()
>
> Cheers,
> Thomas
>
> > On Apr 19, 2018, at 3:33 PM, Yang Su <s...@crystal.harvard.edu> wrote:
Hi,
Is it possible to start multiple independent pymol backend processes in a
python script/jupyter notebook? Now with PyMOL 2.1 I can 'import pymol' and
call a pymol.cmd function to start a backend process, but this is kind of
'global'. I'm looking for a way to manage multiple PyMOL sessions in
t; cartoon dash
>
> See also:
> https://pymolwiki.org/index.php/Cartoon#USAGE
>
> Cheers,
> Thomas
>
> > On Apr 19, 2018, at 12:54 PM, Yang Su <s...@crystal.harvard.edu> wrote:
> >
> > Hi,
> >
> > Is there an option to show the ribbon as dashed o
coding
is already used to represent other properties.
Best,
Yang
On Thu, Apr 19, 2018 at 3:56 PM, Yang Su <s...@crystal.harvard.edu> wrote:
> Thanks for the tip, Thomas. 'cartoon dash' works with cartoon
> representation, but doesn't seem to affect the ribbon representation. For
> s
,
> Thomas
>
> > On Apr 19, 2018, at 4:15 PM, Yang Su <s...@crystal.harvard.edu> wrote:
> >
> > Also, 'cartoon dash' and 'cartoon loop' render beta-strands differently,
> so I can't combine the two and get a consistent look and feel. The use case
> is to show reg
