To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] obtaining coordinates of solvent-surface points
From: Robert Campbell robert.campb...@qu... -
2007-11-22 21:56
Rather than use PyMOL's surface, I've used the triangulated
surface output by Michel Sanner's msms program
Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface. I can obtain the vertices
using cmd.get_povray()[1], but that will give me a
list of coordinates of open cylinders with spheres at
either end. Perhaps these sphere and
Hello John,
On Thu, 22 Nov 2007 12:36:32 -0800 (PST), JJ josh8...@yahoo.com
wrote:
Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface. I can obtain the vertices
using cmd.get_povray()[1], but that will give me a
list of
From: Robert Campbell robert.campb...@qu... -
2007-11-22 21:56
Rather than use PyMOL's surface, I've used the
triangulated surface output
by Michel Sanner's msms program.
Thanks much Rob. Can you please tell me why it might
be better to use msms to calculate surface points
rather than the
From: JJ josh8...@ya... - 2007-11-22 20:36
Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface.
I should have also asked in my original post, is there
a way in pymol to determine the solvent-accessible
surface for a particular
