Qun,
This is something that is easist to do with the Fitting wizard.
Starting with the ATP, click successive matched pairs of atoms in the ATP
and then the ADP. When you have enouch pairs, click Fit. That should be
all you need to do.
Cheers,
Warren
--
mailto:war...@delsci.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Qun Wan
> Sent: Thursday, July 01, 2004 3:34 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] question about superposition
>
> Hi,
> If I want to insert ATP molecule into a molecule which
> contains ADP to see how the extra gamma phosphate contact
> with it possible neighbors, can I use pair_fit to superimpose
> ATP with ADP? How?
>
> Thanks!
>
>
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