[PyMOL] select atoms from residue N and from N+1

2012-09-12 Thread Mooers, Blaine H.M. (HSC)
How do you select atoms from residue N and from N+1 when writing a script to output dihedral angles that span two residues. (i.e., the omega torsion angle that describes the planarity of the peptide plane.) Best regards, Blaine Blaine Mooers Assistant Professor Department of Biochemistry and

[PyMOL] larger font in command history window

2012-09-12 Thread Mooers, Blaine H.M. (HSC)
While lecturing about how to use PyMOL, it would be useful to have size 20 or larger font displayed in the command history window so that people in the back of the room can read the output when projected on a screen. How might this be accomplished? Best regards, Blaine Mooers Blaine

Re: [PyMOL] larger font in command history window

2012-09-12 Thread Jason Vertrees
Hi Blaine, You can force the external GUI to adjust its output size beyond what the menus allow. Going too big, however, will occlude the menu buttons at the right side of the screen, so be careful. If you paste the following code into your ~/.pymolrc it will remap the font size upon pressing the

Re: [PyMOL] select atoms from residue N and from N+1

2012-09-12 Thread Jason Vertrees
Hi Blaine, Please see the bbPlane script (http://www.pymolwiki.org/index.php/BbPlane) as a good starting point to answer this question. Cheers, -- Jason On Wed, Sep 12, 2012 at 8:43 AM, Mooers, Blaine H.M. (HSC) blaine-moo...@ouhsc.edu wrote: How do you select atoms from residue N and from